Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F0220_RS11605 Genome accession   NZ_CP043761
Coordinates   2569210..2570274 (+) Length   354 a.a.
NCBI ID   WP_091017235.1    Uniprot ID   -
Organism   Paenibacillus sp. 37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2564210..2575274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0220_RS11580 - 2564750..2565811 (+) 1062 WP_105598224.1 RodZ domain-containing protein -
  F0220_RS11585 - 2565849..2566049 (+) 201 WP_133384340.1 hypothetical protein -
  F0220_RS11590 - 2566205..2566696 (+) 492 WP_047842512.1 YajQ family cyclic di-GMP-binding protein -
  F0220_RS11595 pgsA 2567016..2567603 (+) 588 WP_017689114.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  F0220_RS11600 - 2567711..2568967 (+) 1257 WP_091017238.1 competence/damage-inducible protein A -
  F0220_RS11605 recA 2569210..2570274 (+) 1065 WP_091017235.1 recombinase RecA Machinery gene
  F0220_RS11610 - 2570571..2571308 (+) 738 WP_091017233.1 regulatory protein RecX -
  F0220_RS11615 rny 2571619..2573160 (+) 1542 WP_036609258.1 ribonuclease Y -
  F0220_RS11620 - 2573315..2574109 (+) 795 WP_017689109.1 TIGR00282 family metallophosphoesterase -
  F0220_RS11625 - 2574227..2574487 (+) 261 WP_007430104.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38320.71 Da        Isoelectric Point: 5.0928

>NTDB_id=385721 F0220_RS11605 WP_091017235.1 2569210..2570274(+) (recA) [Paenibacillus sp. 37]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMNVEIIPSGSLALDIALGTGGLPKGRIVEIYGPESSGKTTVALHAIAE
VQRAGGQAAFIDAEHALDPQYASKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIVVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKSGNDMIGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISREGSIIDIGTELDIVNKSGAWYSYEGERLGQGRENAKQFMKEHKDIADIIEQK
IRVASNLVTAVPAPTTEEQQKEAAEEQELFEINE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=385721 F0220_RS11605 WP_091017235.1 2569210..2570274(+) (recA) [Paenibacillus sp. 37]
TTGTCAGACCGTCGTGCCGCGCTTGATATGGCGCTCCGTCAAATAGAGAAGCAATTTGGTAAAGGATCCATCATGAAACT
GGGTGAGTCCACTCATATGAATGTGGAAATAATTCCCAGCGGTTCCTTGGCTTTGGATATTGCATTAGGAACAGGCGGCT
TGCCTAAAGGCCGTATTGTTGAAATATATGGACCTGAGTCTTCGGGTAAAACAACCGTAGCATTGCATGCTATCGCTGAA
GTACAACGAGCGGGTGGACAAGCTGCATTTATCGATGCCGAGCATGCTCTTGACCCACAATACGCAAGCAAACTTGGTGT
TAATATTGATGAATTGCTTCTGTCTCAGCCAGATACGGGTGAGCAAGGGTTGGAAATTGCAGAAGCTCTTGTACGCAGTG
GTGCAGTAGATATCGTTGTTATTGACTCTGTAGCCGCATTGGTTCCAAAAGCAGAGATTGAAGGCGAAATGGGCGATTCA
CACGTTGGTTTGCAAGCGCGTTTGATGTCTCAGGCGCTGCGTAAACTGTCTGGTGCAATCAGCAAATCCAAAACAATCGC
AATCTTCATTAACCAGCTTCGTGAGAAAGTCGGCGTTATGTTTGGTAACCCAGAAACAACACCTGGTGGTCGTGCTCTGA
AGTTTTATTCCACAGTACGTCTGGATGTGCGTCGTATTGAGAGTATCAAATCAGGCAATGACATGATTGGTAACCGTACT
CGTATTAAAGTCGTGAAAAACAAAGTGGCACCTCCGTTTAAACAAGCGGAAGTGGATATCATGTATGGCGAGGGTATTTC
GAGAGAAGGCAGTATCATTGACATTGGTACAGAGCTGGACATCGTTAATAAAAGTGGTGCATGGTACTCCTACGAAGGCG
AGCGTTTAGGACAAGGTCGTGAGAACGCAAAGCAGTTCATGAAAGAGCATAAAGATATTGCTGACATCATTGAACAAAAA
ATTCGTGTAGCCAGTAACTTGGTTACTGCAGTTCCTGCGCCAACTACTGAAGAGCAACAAAAAGAAGCAGCAGAAGAACA
AGAATTGTTTGAAATCAACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.851

90.96

0.763
  recA Latilactobacillus sakei subsp. sakei 23K

73.314

96.328

0.706
  recA Streptococcus mutans UA159

65

100

0.661
  recA Streptococcus pneumoniae D39

65.449

100

0.658
  recA Streptococcus pneumoniae Rx1

65.449

100

0.658
  recA Streptococcus pneumoniae R6

65.449

100

0.658
  recA Streptococcus pneumoniae TIGR4

65.449

100

0.658
  recA Streptococcus mitis NCTC 12261

66.092

98.305

0.65
  recA Streptococcus pyogenes NZ131

70.462

91.808

0.647
  recA Lactococcus lactis subsp. cremoris KW2

68.882

93.503

0.644
  recA Streptococcus mitis SK321

67.674

93.503

0.633
  recA Neisseria gonorrhoeae strain FA1090

64.671

94.35

0.61
  recA Neisseria gonorrhoeae MS11

64.671

94.35

0.61
  recA Neisseria gonorrhoeae MS11

64.671

94.35

0.61
  recA Acinetobacter baylyi ADP1

60.511

99.435

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.25

90.395

0.599
  recA Vibrio cholerae strain A1552

66.25

90.395

0.599
  recA Glaesserella parasuis strain SC1401

60.114

99.153

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.526

92.373

0.596
  recA Pseudomonas stutzeri DSM 10701

62.874

94.35

0.593
  recA Ralstonia pseudosolanacearum GMI1000

67.532

87.006

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.863

90.678

0.579
  recA Helicobacter pylori 26695

62.691

92.373

0.579
  recA Helicobacter pylori strain NCTC11637

62.385

92.373

0.576
  recA Acinetobacter baumannii D1279779

63.438

90.395

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.678

0.551

Multiple sequence alignment