Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F0365_RS04655 Genome accession   NZ_CP043633
Coordinates   1033349..1034362 (-) Length   337 a.a.
NCBI ID   WP_169932626.1    Uniprot ID   A0A7L5FVY5
Organism   Nonlabens sp. Ci31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1028349..1039362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0365_RS04630 (F0365_04605) trpS 1028637..1029605 (-) 969 WP_169932622.1 tryptophan--tRNA ligase -
  F0365_RS04635 (F0365_04610) - 1029770..1030504 (+) 735 WP_240961899.1 lysophospholipid acyltransferase family protein -
  F0365_RS04640 (F0365_04615) - 1030651..1032249 (-) 1599 WP_169932623.1 outer membrane beta-barrel protein -
  F0365_RS04645 (F0365_04620) - 1032252..1032797 (-) 546 WP_317169841.1 RNA polymerase sigma factor -
  F0365_RS04650 (F0365_04625) - 1032815..1033228 (-) 414 WP_169932625.1 hypothetical protein -
  F0365_RS04655 (F0365_04630) recA 1033349..1034362 (-) 1014 WP_169932626.1 recombinase RecA Machinery gene
  F0365_RS04660 (F0365_04635) - 1034549..1035265 (-) 717 WP_169932627.1 T9SS type A sorting domain-containing protein -
  F0365_RS04665 (F0365_04640) - 1035262..1036689 (-) 1428 WP_169932628.1 fibronectin type III domain-containing protein -
  F0365_RS04670 (F0365_04645) - 1036877..1037926 (+) 1050 WP_169932629.1 rhodanese-related sulfurtransferase -
  F0365_RS04675 (F0365_04650) dusB 1037992..1038984 (+) 993 WP_169932630.1 tRNA dihydrouridine synthase DusB -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36357.79 Da        Isoelectric Point: 6.3031

>NTDB_id=385560 F0365_RS04655 WP_169932626.1 1033349..1034362(-) (recA) [Nonlabens sp. Ci31]
MADDKEKEAKLKALKLTLDKLDKAYGKGTVMKLGDKQVVEVESISTGSLALNAALGVGGYPRGRVVEIYGPESSGKTTLT
LHAIAEAQKTGGIAAFIDAEHAFDRFYAEKLGVDLENLIISQPDNGEQALEIADNLIRSGAIDIIVIDSVAALTPKSEIE
GEMGDSKMGLHARLMSQACRKLTSSISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSAG
AVLGNKTRVKVVKNKVAPPFRMAEFDIMYGEGVSKLGEIIDLGVNYEIINKAGSWFSYEDTKLGQGRDSVKTILKDNPDL
VEELEAKIMAAIKAVNA

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=385560 F0365_RS04655 WP_169932626.1 1033349..1034362(-) (recA) [Nonlabens sp. Ci31]
ATGGCAGACGATAAAGAGAAAGAAGCAAAATTAAAAGCCCTTAAACTTACCCTTGACAAGCTAGACAAGGCATATGGTAA
AGGAACAGTAATGAAATTGGGCGATAAGCAAGTGGTTGAGGTAGAGTCTATTTCTACTGGTTCACTCGCATTAAATGCGG
CTCTAGGTGTAGGTGGGTATCCTCGTGGAAGAGTTGTTGAAATATACGGTCCTGAATCTTCAGGTAAAACTACCTTGACC
TTACACGCCATTGCTGAAGCACAAAAAACGGGTGGGATTGCTGCATTTATTGATGCAGAGCATGCATTTGATCGTTTTTA
TGCTGAAAAACTAGGTGTCGATTTAGAAAACTTAATTATTTCTCAACCAGATAACGGAGAACAAGCATTAGAAATAGCAG
ATAATTTGATACGCTCTGGCGCAATAGATATCATTGTAATTGACTCGGTTGCAGCATTAACTCCTAAAAGCGAAATTGAA
GGAGAAATGGGAGATAGTAAAATGGGGCTTCATGCTCGTTTAATGTCTCAAGCATGTAGAAAATTAACCAGTTCTATTTC
TAAAACAAATTGTACGGTTATTTTTATCAACCAATTGCGTGAAAAGATAGGAGTGATGTTCGGTAATCCAGAGACAACTA
CTGGTGGTAATGCCTTAAAATTCTATGCATCGGTTAGGCTTGATATTAGAAGATCTACACAAATTAAAGATAGCGCAGGT
GCCGTTTTAGGTAACAAAACTCGTGTTAAAGTTGTTAAGAATAAAGTAGCACCCCCTTTTAGAATGGCTGAGTTTGATAT
CATGTACGGTGAAGGGGTTTCTAAACTAGGAGAGATAATTGATTTAGGGGTGAACTATGAAATAATAAACAAAGCCGGTT
CTTGGTTCTCTTATGAAGATACTAAATTAGGTCAAGGGCGAGATTCTGTTAAAACAATTCTTAAAGATAATCCAGACCTC
GTAGAGGAGTTGGAAGCTAAAATCATGGCAGCCATAAAAGCAGTAAACGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L5FVY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

76.667

97.923

0.751
  recA Neisseria gonorrhoeae MS11

64.35

98.22

0.632
  recA Neisseria gonorrhoeae strain FA1090

64.35

98.22

0.632
  recA Neisseria gonorrhoeae MS11

64.35

98.22

0.632
  recA Acinetobacter baylyi ADP1

65.831

94.659

0.623
  recA Ralstonia pseudosolanacearum GMI1000

67.532

91.395

0.617
  recA Acinetobacter baumannii D1279779

64.486

95.252

0.614
  recA Helicobacter pylori 26695

61.862

98.813

0.611
  recA Helicobacter pylori strain NCTC11637

61.562

98.813

0.608
  recA Glaesserella parasuis strain SC1401

63.467

95.846

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.346

96.142

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

63.924

93.769

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.994

95.252

0.591
  recA Vibrio cholerae strain A1552

61.994

95.252

0.591
  recA Pseudomonas stutzeri DSM 10701

60.303

97.923

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

59.385

96.439

0.573
  recA Streptococcus pyogenes NZ131

59.938

95.549

0.573
  recA Streptococcus mitis NCTC 12261

60.312

94.955

0.573
  recA Streptococcus mitis SK321

60.312

94.955

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.443

95.846

0.57
  recA Streptococcus pneumoniae D39

59.375

94.955

0.564
  recA Streptococcus pneumoniae R6

59.375

94.955

0.564
  recA Streptococcus pneumoniae Rx1

59.375

94.955

0.564
  recA Streptococcus pneumoniae TIGR4

59.375

94.955

0.564
  recA Streptococcus mutans UA159

58.75

94.955

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.988

99.11

0.555

Multiple sequence alignment