Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F0R78_RS03025 Genome accession   NZ_CP043610
Coordinates   630560..631603 (-) Length   347 a.a.
NCBI ID   WP_005785787.1    Uniprot ID   A0AAN4SJ92
Organism   Bacteroides fragilis strain GUT04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 625560..636603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0R78_RS02990 - 625752..626333 (+) 582 WP_005812895.1 DUF6621 family protein -
  F0R78_RS02995 - 626358..627254 (+) 897 WP_005785776.1 LysR family transcriptional regulator -
  F0R78_RS03000 - 627334..628326 (+) 993 WP_005785778.1 YeiH family protein -
  F0R78_RS03005 - 628415..629098 (-) 684 WP_005812892.1 DUF4252 domain-containing protein -
  F0R78_RS03010 - 629105..629632 (-) 528 WP_005795692.1 hypothetical protein -
  F0R78_RS03015 - 629613..630128 (-) 516 WP_005785783.1 RNA polymerase sigma factor -
  F0R78_RS03020 - 630213..630494 (+) 282 WP_005785786.1 hypothetical protein -
  F0R78_RS03025 recA 630560..631603 (-) 1044 WP_005785787.1 recombinase RecA Machinery gene
  F0R78_RS03030 bcp 631614..632060 (-) 447 WP_005785789.1 thioredoxin-dependent thiol peroxidase -
  F0R78_RS03035 - 632143..633336 (-) 1194 WP_005785790.1 saccharopine dehydrogenase family protein -
  F0R78_RS03040 - 633431..634681 (-) 1251 WP_009291779.1 hypothetical protein -
  F0R78_RS03045 - 634806..635597 (+) 792 WP_005785793.1 META domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37581.92 Da        Isoelectric Point: 5.2085

>NTDB_id=385434 F0R78_RS03025 WP_005785787.1 630560..631603(-) (recA) [Bacteroides fragilis strain GUT04]
MAKKEDELNFETDNNKMASSEKLKALQAAMDKIEKSFGKGSIMKMGEEVVEQVEVIPTGSIALNAALGVGGYPRGRIIEI
YGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAEQLIRSSAIDIIVVD
SVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLD
IRGSQQIKDGEEVIGKQTKVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGRDA
AKQCIADNPELAEELEGLIFEKLREHK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=385434 F0R78_RS03025 WP_005785787.1 630560..631603(-) (recA) [Bacteroides fragilis strain GUT04]
ATGGCAAAGAAAGAAGACGAATTAAACTTTGAAACAGATAATAATAAAATGGCATCAAGCGAAAAATTAAAAGCCTTACA
GGCTGCCATGGACAAGATAGAGAAAAGCTTCGGTAAAGGTTCTATCATGAAAATGGGTGAAGAAGTGGTAGAACAAGTAG
AAGTAATTCCAACAGGTTCGATAGCACTGAATGCTGCATTAGGCGTAGGCGGTTATCCCCGTGGAAGAATCATTGAAATT
TATGGTCCGGAATCATCCGGTAAAACGACACTGGCCATCCACGCCATTGCAGAAGCACAAAAAGCCGGTGGAATTGCCGC
TTTCATTGATGCGGAACATGCTTTTGACCGCTTCTATGCGGCTAAACTGGGAGTAGATGTGGATAACCTGTTCATCTCGC
AACCCGATAACGGAGAACAGGCGTTGGAAATTGCAGAACAATTGATACGCTCTTCAGCTATTGACATCATCGTAGTGGAC
TCTGTAGCCGCCTTGACTCCGAAAGCTGAAATTGAAGGGGATATGGGTGACAACAAAGTGGGCTTGCAAGCCCGCCTAAT
GTCACAGGCATTACGTAAGTTAACATCAGCTGTAAGCAAGACTCGTACAACCTGTATCTTCATCAACCAGTTGCGTGAGA
AAATCGGTGTAATGTTCGGTAATCCGGAAACAACAACCGGTGGTAATGCATTAAAATTCTATGCTTCCGTACGTTTGGAT
ATCCGCGGTTCACAGCAGATCAAAGACGGTGAAGAAGTGATTGGTAAGCAGACGAAAGTCAAAGTTGTGAAAAATAAGGT
AGCTCCTCCTTTCCGCAAGGCAGAATTCGATATTATGTTTGGTGAAGGCATATCACATTCGGGAGAAATCATTGACCTGG
GAGCGGATTTGGGAATTATCAAGAAAAGCGGTTCATGGTATAGCTACAACGACACCAAATTGGGCCAAGGTCGTGATGCA
GCAAAACAATGTATCGCCGACAATCCAGAACTTGCCGAAGAACTGGAAGGACTGATCTTTGAAAAGTTGAGAGAGCACAA
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

71.515

95.101

0.68
  recA Ralstonia pseudosolanacearum GMI1000

66.463

94.524

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

66.361

94.236

0.625
  recA Streptococcus mitis SK321

63.529

97.983

0.622
  recA Streptococcus mitis NCTC 12261

63.529

97.983

0.622
  recA Streptococcus pneumoniae D39

61.96

100

0.62
  recA Streptococcus pneumoniae R6

61.96

100

0.62
  recA Streptococcus pneumoniae TIGR4

61.96

100

0.62
  recA Streptococcus pneumoniae Rx1

61.96

100

0.62
  recA Neisseria gonorrhoeae MS11

66.77

92.795

0.62
  recA Neisseria gonorrhoeae strain FA1090

66.77

92.795

0.62
  recA Neisseria gonorrhoeae MS11

66.77

92.795

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.984

90.778

0.608
  recA Streptococcus pyogenes NZ131

61.765

97.983

0.605
  recA Streptococcus mutans UA159

62.13

97.406

0.605
  recA Glaesserella parasuis strain SC1401

65.19

91.066

0.594
  recA Lactococcus lactis subsp. cremoris KW2

60.588

97.983

0.594
  recA Helicobacter pylori strain NCTC11637

64.557

91.066

0.588
  recA Helicobacter pylori 26695

64.557

91.066

0.588
  recA Acinetobacter baumannii D1279779

63.043

92.795

0.585
  recA Acinetobacter baylyi ADP1

63.043

92.795

0.585
  recA Vibrio cholerae strain A1552

62.037

93.372

0.579
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.037

93.372

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

63.009

91.931

0.579
  recA Pseudomonas stutzeri DSM 10701

62.112

92.795

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.856

94.236

0.573

Multiple sequence alignment