Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HG569_RS00525 Genome accession   NZ_CP051498
Coordinates   105258..105725 (-) Length   155 a.a.
NCBI ID   WP_202272738.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-006     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 100258..110725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG569_RS00510 (HG569_00510) - 100652..101434 (-) 783 WP_000922051.1 glycosyltransferase family 2 protein -
  HG569_RS00515 (HG569_00515) tlpB 101464..103161 (-) 1698 WP_202272736.1 methyl-accepting chemotaxis protein TlpB -
  HG569_RS00520 (HG569_00520) - 103352..105052 (-) 1701 WP_338154430.1 5'-nucleotidase C-terminal domain-containing protein -
  HG569_RS00525 (HG569_00525) luxS 105258..105725 (-) 468 WP_202272738.1 S-ribosylhomocysteine lyase Regulator
  HG569_RS00530 (HG569_00530) - 105760..106902 (-) 1143 WP_202272739.1 cystathionine gamma-synthase -
  HG569_RS00535 (HG569_00535) - 106923..107840 (-) 918 WP_202272740.1 O-acetylserine-dependent cystathionine beta-synthase -
  HG569_RS00540 (HG569_00540) - 108026..108497 (+) 472 Protein_98 hypothetical protein -
  HG569_RS00545 (HG569_00545) dnaK 108637..110499 (-) 1863 WP_202272741.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17696.25 Da        Isoelectric Point: 7.1166

>NTDB_id=384613 HG569_RS00525 WP_202272738.1 105258..105725(-) (luxS) [Helicobacter pylori strain PUNO-006]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAKDLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=384613 HG569_RS00525 WP_202272738.1 105258..105725(-) (luxS) [Helicobacter pylori strain PUNO-006]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATCGTCAAATACGATGTGCGCTTCAAACAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTTGCTGAGATTATCCGCAACCATGCCAGTTACGTCGTAGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGTGCTAAGGATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

90.968

0.381

Multiple sequence alignment