Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FZ934_RS07290 Genome accession   NZ_CP043498
Coordinates   1464398..1465477 (-) Length   359 a.a.
NCBI ID   WP_153270514.1    Uniprot ID   A0A5Q0C2Y6
Organism   Rhizobium grahamii strain BG7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1459398..1470477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZ934_RS07270 (FZ934_07310) - 1459420..1459866 (+) 447 WP_153270510.1 GNAT family N-acetyltransferase -
  FZ934_RS07275 (FZ934_07315) - 1459975..1460595 (+) 621 WP_153270511.1 glutathione S-transferase family protein -
  FZ934_RS07280 (FZ934_07320) - 1460597..1461448 (-) 852 WP_153270512.1 AraC family transcriptional regulator -
  FZ934_RS07285 (FZ934_07325) alaS 1461584..1464244 (-) 2661 WP_153270513.1 alanine--tRNA ligase -
  FZ934_RS07290 (FZ934_07330) recA 1464398..1465477 (-) 1080 WP_153270514.1 recombinase RecA Machinery gene
  FZ934_RS07295 (FZ934_07335) - 1465717..1466661 (+) 945 WP_153270515.1 carbohydrate kinase family protein -
  FZ934_RS07300 (FZ934_07340) - 1466690..1467616 (+) 927 WP_153270516.1 pseudouridine-5'-phosphate glycosidase -
  FZ934_RS07305 (FZ934_07345) - 1467670..1468050 (-) 381 WP_153270517.1 hypothetical protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38594.05 Da        Isoelectric Point: 5.1871

>NTDB_id=384613 FZ934_RS07290 WP_153270514.1 1464398..1465477(-) (recA) [Rhizobium grahamii strain BG7]
MSQNSLRLVEDKSVDKSKALEAALSQIERSFGKGSIMKLGSNESVVEIETVSTGSLGLDIALGIGGLPKGRIIEVYGPES
SGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
QVKEREEVIGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYSSQRLGQGRENAKIFL
RDNPEVMREIETSIRQNAGLIADQLQNGGPDANDGDDDS

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=384613 FZ934_RS07290 WP_153270514.1 1464398..1465477(-) (recA) [Rhizobium grahamii strain BG7]
ATGTCACAGAATTCATTGCGGCTCGTAGAGGACAAATCGGTGGACAAAAGCAAGGCACTTGAAGCGGCACTCTCACAGAT
CGAGCGGTCGTTCGGCAAGGGCTCTATCATGAAGCTGGGCTCGAACGAGAGCGTGGTCGAGATCGAGACGGTATCGACCG
GCTCTCTCGGCCTCGATATCGCGCTCGGCATTGGCGGCCTGCCGAAGGGCCGCATCATCGAAGTTTACGGGCCTGAGAGC
TCGGGTAAGACGACGCTGGCGCTGCAGACCATTGCGGAAGCGCAGAAGAAGGGCGGCATCTGCGCCTTCGTCGACGCCGA
GCACGCGCTCGATCCGGTCTACGCACGCAAGCTCGGGGTCGATCTGCACAATCTGCTGATCTCCCAGCCCGATACAGGCG
AGCAGGCGCTCGAGATCACCGATACGCTGGTCCGCTCCGGCGCGGTCGACGTACTGGTGGTGGATTCGGTTGCGGCTCTG
ACGCCGCGTGCCGAAATCGAAGGCGAAATGGGCGACAGCCTGCCGGGCCTCCAGGCTCGACTGATGAGCCAGGCGCTGCG
CAAGCTGACTGCATCGATCTCGAAGTCGAAGACCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGT
TCGGTTCGCCGGAAACGACGACCGGCGGCAACGCGCTGAAGTTCTACGCTTCCGTGCGCCTCGACATCCGCCGTATCGGC
CAGGTCAAGGAGCGCGAAGAGGTGATCGGCAACCAGACGCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCTCCCTTCAA
GCAGGTCGAATTCGACATCATGTATGGCGAAGGTGTCTCCAAGACGGGCGAGTTGATTGATCTGGGCGTCAAGGCCGGCA
TCGTGGAAAAGTCGGGTGCTTGGTTCTCCTACAGCAGCCAGCGCCTTGGCCAGGGCCGCGAGAACGCCAAGATCTTCCTG
CGTGATAATCCCGAGGTGATGCGCGAGATCGAGACGTCGATCCGCCAAAATGCGGGCCTGATCGCCGATCAACTCCAGAA
TGGCGGTCCCGACGCCAACGATGGCGATGATGACTCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q0C2Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

67.442

95.822

0.646
  recA Neisseria gonorrhoeae MS11

67.442

95.822

0.646
  recA Neisseria gonorrhoeae MS11

67.442

95.822

0.646
  recA Glaesserella parasuis strain SC1401

67.638

95.543

0.646
  recA Acinetobacter baylyi ADP1

71.739

89.694

0.643
  recA Acinetobacter baumannii D1279779

71.118

89.694

0.638
  recA Ralstonia pseudosolanacearum GMI1000

71.656

87.465

0.627
  recA Pseudomonas stutzeri DSM 10701

70.093

89.415

0.627
  recA Vibrio cholerae strain A1552

68.944

89.694

0.618
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.944

89.694

0.618
  recA Bacillus subtilis subsp. subtilis str. 168

68.098

90.808

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

91.086

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.055

91.086

0.602
  recA Helicobacter pylori 26695

65.644

90.808

0.596
  recA Helicobacter pylori strain NCTC11637

65.644

90.808

0.596
  recA Streptococcus mitis SK321

61.934

92.201

0.571
  recA Streptococcus mitis NCTC 12261

61.631

92.201

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.038

88.301

0.565
  recA Streptococcus pneumoniae Rx1

61.329

92.201

0.565
  recA Streptococcus pneumoniae D39

61.329

92.201

0.565
  recA Streptococcus pneumoniae R6

61.329

92.201

0.565
  recA Streptococcus pneumoniae TIGR4

61.329

92.201

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

61.963

90.808

0.563
  recA Streptococcus mutans UA159

60.121

92.201

0.554
  recA Streptococcus pyogenes NZ131

60.486

91.643

0.554
  recA Lactococcus lactis subsp. cremoris KW2

59.104

93.315

0.552

Multiple sequence alignment