Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F0U61_RS41905 Genome accession   NZ_CP043493
Coordinates   10295167..10296213 (+) Length   348 a.a.
NCBI ID   WP_395808402.1    Uniprot ID   -
Organism   Archangium violaceum strain Cbvi 34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 10290167..10301213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0U61_RS41885 (F0U61_41835) - 10290345..10290935 (-) 591 WP_395831988.1 hypothetical protein -
  F0U61_RS41890 (F0U61_41840) - 10291201..10292835 (+) 1635 WP_395831990.1 YifB family Mg chelatase-like AAA ATPase -
  F0U61_RS41895 (F0U61_41845) - 10292783..10294126 (-) 1344 WP_395808398.1 NAD(P)/FAD-dependent oxidoreductase -
  F0U61_RS41900 (F0U61_41850) - 10294227..10294997 (+) 771 WP_395808400.1 lysophospholipid acyltransferase family protein -
  F0U61_RS41905 (F0U61_41855) recA 10295167..10296213 (+) 1047 WP_395808402.1 recombinase RecA Machinery gene
  F0U61_RS41910 (F0U61_41860) - 10296210..10296728 (-) 519 WP_395831992.1 DUF1285 domain-containing protein -
  F0U61_RS41915 (F0U61_41865) - 10296781..10298274 (-) 1494 WP_395831994.1 hypothetical protein -
  F0U61_RS41920 (F0U61_41870) - 10298271..10299533 (-) 1263 WP_395831996.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  F0U61_RS41925 (F0U61_41875) pssA 10299588..10300418 (-) 831 WP_395808410.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37012.58 Da        Isoelectric Point: 7.1224

>NTDB_id=384585 F0U61_RS41905 WP_395808402.1 10295167..10296213(+) (recA) [Archangium violaceum strain Cbvi 34]
MNKLTEKLKAVAAAVAAIEKQFGKGAVMPLGGEVREQRVAVIPTGSVGLDRALGVGGYPRGRVVELFGNESSGKTTLTLH
AIAQVQAQGGVAAFIDAEHALDVNYARKLGVRVEELLISQPDTGEQALEITEQLVRSGAVDLIVVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGCCIIFINQIRMKIGVVFGNPETTTGGNALKFYSSVRMEIRRTSNLKDGENVV
GTRAKVKVVKNKVAPPFQEAEFDLLYGVGIHRAGEVLDLAVHSGLVDKAGSHFSLRGERIGQGRERASEWLREHPEALEG
LARELVGMTLPVPAPNPSAEMEAPAAMA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=384585 F0U61_RS41905 WP_395808402.1 10295167..10296213(+) (recA) [Archangium violaceum strain Cbvi 34]
ATGAACAAGCTGACGGAGAAGCTGAAGGCGGTGGCGGCGGCGGTGGCGGCGATCGAGAAGCAGTTCGGCAAGGGCGCGGT
GATGCCCCTGGGCGGCGAGGTGCGCGAGCAGCGGGTGGCAGTCATCCCCACGGGCTCGGTGGGGTTGGACCGGGCGCTCG
GCGTGGGCGGCTACCCGCGCGGGCGCGTGGTGGAGCTGTTCGGCAACGAGTCCTCGGGCAAGACGACGCTCACGCTGCAC
GCCATCGCGCAGGTGCAGGCCCAGGGGGGTGTGGCGGCCTTCATCGACGCGGAGCACGCGCTGGACGTCAACTACGCACG
CAAGCTGGGCGTGCGCGTGGAGGAGCTGCTCATCTCCCAGCCGGACACCGGAGAGCAGGCGCTGGAGATCACCGAACAGC
TCGTGCGCTCGGGAGCGGTGGATCTCATCGTGGTGGACTCGGTGGCGGCGCTCGTGCCGCGCGCGGAGATTGAAGGCGAG
ATGGGCGACGCGCACATGGGCGTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGCTGACGGGTGCGGTGAGCCGGTC
GGGGTGCTGCATCATCTTCATCAATCAGATCCGCATGAAGATCGGCGTGGTGTTCGGCAACCCGGAGACGACCACGGGCG
GCAACGCGCTGAAGTTCTACTCCTCGGTGCGCATGGAGATCCGCCGCACGAGCAACCTCAAGGACGGGGAGAACGTGGTG
GGCACGCGGGCGAAGGTGAAGGTGGTGAAGAACAAGGTGGCCCCGCCCTTCCAGGAGGCGGAGTTCGACCTGCTGTACGG
CGTGGGCATCCACCGCGCGGGCGAGGTGCTGGACCTGGCGGTGCACTCGGGGCTGGTGGACAAGGCTGGCAGCCACTTCA
GCCTGCGCGGAGAGCGCATCGGCCAGGGCCGTGAGCGGGCCTCGGAGTGGCTGCGCGAACACCCGGAGGCCCTGGAGGGG
CTCGCCCGTGAGCTGGTGGGGATGACCCTCCCCGTCCCAGCGCCGAACCCGAGCGCCGAGATGGAGGCGCCCGCGGCAAT
GGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

65.549

94.253

0.618
  recA Glaesserella parasuis strain SC1401

60.704

97.989

0.595
  recA Pseudomonas stutzeri DSM 10701

66.129

89.08

0.589
  recA Acinetobacter baylyi ADP1

63.24

92.241

0.583
  recA Neisseria gonorrhoeae strain FA1090

65.273

89.368

0.583
  recA Neisseria gonorrhoeae MS11

65.273

89.368

0.583
  recA Neisseria gonorrhoeae MS11

65.273

89.368

0.583
  recA Vibrio cholerae strain A1552

62.654

93.103

0.583
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.654

93.103

0.583
  recA Acinetobacter baumannii D1279779

62.696

91.667

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

63.492

90.517

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.87

92.529

0.563
  recA Helicobacter pylori 26695

56.977

98.851

0.563
  recA Helicobacter pylori strain NCTC11637

56.686

98.851

0.56
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.736

89.368

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

61.415

89.368

0.549
  recA Streptococcus mutans UA159

57.5

91.954

0.529
  recA Streptococcus pyogenes NZ131

56.79

93.103

0.529
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.654

89.655

0.526
  recA Streptococcus pneumoniae Rx1

56.481

93.103

0.526
  recA Streptococcus pneumoniae R6

56.481

93.103

0.526
  recA Streptococcus pneumoniae TIGR4

56.481

93.103

0.526
  recA Streptococcus pneumoniae D39

56.481

93.103

0.526
  recA Streptococcus mitis NCTC 12261

56.604

91.379

0.517
  recA Streptococcus mitis SK321

56.782

91.092

0.517
  recA Lactococcus lactis subsp. cremoris KW2

55.975

91.379

0.511

Multiple sequence alignment