Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F0U62_RS11040 Genome accession   NZ_CP043492
Coordinates   2668239..2669285 (-) Length   348 a.a.
NCBI ID   WP_395855153.1    Uniprot ID   -
Organism   Cystobacter fuscus strain Cbf 8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2663239..2674285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0U62_RS11020 (F0U62_11035) pssA 2663968..2664819 (+) 852 WP_395855149.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  F0U62_RS11025 (F0U62_11040) - 2664856..2666121 (+) 1266 WP_395855150.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  F0U62_RS11030 (F0U62_11045) - 2666118..2667665 (+) 1548 WP_395855151.1 hypothetical protein -
  F0U62_RS11035 (F0U62_11050) - 2667721..2668242 (+) 522 WP_395855152.1 DUF1285 domain-containing protein -
  F0U62_RS11040 (F0U62_11055) recA 2668239..2669285 (-) 1047 WP_395855153.1 recombinase RecA Machinery gene
  F0U62_RS11045 (F0U62_11060) - 2669452..2671065 (-) 1614 WP_395855155.1 YifB family Mg chelatase-like AAA ATPase -
  F0U62_RS11050 (F0U62_11065) - 2671345..2671917 (+) 573 WP_395855156.1 hypothetical protein -
  F0U62_RS11055 (F0U62_11070) - 2671818..2672441 (-) 624 WP_043430187.1 DUF2378 family protein -
  F0U62_RS11060 (F0U62_11075) - 2672497..2673003 (-) 507 WP_395855158.1 ExbD/TolR family protein -
  F0U62_RS11065 (F0U62_11080) - 2673006..2673431 (-) 426 WP_395845721.1 ExbD/TolR family protein -
  F0U62_RS11070 (F0U62_11085) - 2673534..2674211 (-) 678 WP_395855159.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 36770.07 Da        Isoelectric Point: 7.0574

>NTDB_id=384566 F0U62_RS11040 WP_395855153.1 2668239..2669285(-) (recA) [Cystobacter fuscus strain Cbf 8]
MNKLTEKLKAVAAAVAAIEKQFGKGSVMALGGEAREQKVAVIPSGSVGLDRALGVGGYPRGRVVELFGNESSGKTTLTLH
AIAQVQAQGGVAAFIDAEHALDVNYARKLGVRVEELLISQPDTGEQALEITEQLVRSGAVDLIVVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGCCIIFINQIRMKIGVVFGNPETTTGGNALKFYSSVRLEIRRTGNLKDGESVV
GTRAKVKVVKNKVAPPFQEAEFDVLYGLGIHRAGEVLDLGVQTGLVDKAGSHFSLRGERIGQGRDRATEWLREHPDALES
LARELASMIPTAAPATASTEAEAPTAQA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=384566 F0U62_RS11040 WP_395855153.1 2668239..2669285(-) (recA) [Cystobacter fuscus strain Cbf 8]
ATGAACAAGCTGACGGAGAAGTTGAAGGCGGTGGCGGCGGCGGTGGCGGCGATCGAGAAGCAGTTCGGCAAGGGGTCGGT
GATGGCGCTGGGGGGCGAGGCGCGCGAGCAGAAGGTGGCGGTGATTCCCTCGGGCTCGGTGGGGTTGGATCGGGCGCTCG
GGGTGGGGGGCTACCCGCGCGGACGCGTGGTGGAGCTGTTCGGCAACGAGTCCTCGGGCAAGACGACGCTCACGCTGCAT
GCCATCGCCCAGGTGCAGGCGCAGGGCGGCGTGGCGGCCTTCATCGACGCGGAGCACGCGCTGGACGTCAACTACGCGCG
CAAGCTGGGCGTGCGCGTGGAGGAGCTGCTCATCTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAGATCACCGAGCAGC
TCGTGCGCTCGGGCGCGGTGGATCTCATCGTGGTGGACTCGGTGGCGGCGCTGGTGCCGCGCGCGGAGATCGAGGGGGAG
ATGGGGGATGCGCACATGGGCGTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCGCGGTGAGCCGCTC
GGGCTGCTGCATCATCTTCATCAATCAGATCCGCATGAAGATCGGCGTGGTGTTCGGCAACCCGGAGACGACCACGGGAG
GCAACGCGCTGAAGTTCTACTCGTCGGTGCGCCTGGAGATCCGCCGCACGGGCAACCTCAAGGACGGCGAGAGCGTGGTG
GGGACGCGGGCGAAGGTGAAGGTGGTGAAGAACAAGGTCGCCCCGCCCTTCCAGGAAGCGGAGTTCGACGTGCTCTACGG
CCTGGGCATCCACCGCGCGGGCGAGGTGCTGGACCTGGGGGTGCAGACGGGACTGGTGGACAAGGCGGGCAGCCACTTCA
GCCTGCGCGGCGAGCGCATCGGCCAGGGCCGCGACCGGGCCACCGAGTGGCTGCGCGAGCACCCGGACGCGCTGGAGTCC
CTCGCCCGGGAGCTGGCGAGCATGATCCCCACCGCGGCGCCCGCCACCGCGAGCACCGAGGCGGAGGCTCCCACGGCGCA
GGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

68.59

89.655

0.615
  recA Pseudomonas stutzeri DSM 10701

62.908

96.839

0.609
  recA Neisseria gonorrhoeae MS11

61.243

97.126

0.595
  recA Neisseria gonorrhoeae MS11

61.243

97.126

0.595
  recA Neisseria gonorrhoeae strain FA1090

61.243

97.126

0.595
  recA Acinetobacter baylyi ADP1

61.424

96.839

0.595
  recA Glaesserella parasuis strain SC1401

61.424

96.839

0.595
  recA Vibrio cholerae strain A1552

63.158

92.816

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.158

92.816

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

64.444

90.517

0.583
  recA Acinetobacter baumannii D1279779

62.154

93.391

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.18

92.529

0.566
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.567

96.839

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

61.736

89.368

0.552
  recA Streptococcus mutans UA159

58.075

92.529

0.537
  recA Helicobacter pylori 26695

60.194

88.793

0.534
  recA Helicobacter pylori strain NCTC11637

60.194

88.793

0.534
  recA Streptococcus pyogenes NZ131

57.099

93.103

0.532
  recA Streptococcus pneumoniae D39

56.748

93.678

0.532
  recA Streptococcus pneumoniae R6

56.748

93.678

0.532
  recA Streptococcus pneumoniae TIGR4

56.748

93.678

0.532
  recA Streptococcus pneumoniae Rx1

56.748

93.678

0.532
  recA Streptococcus mitis NCTC 12261

56.442

93.678

0.529
  recA Streptococcus mitis SK321

56.442

93.678

0.529
  recA Lactococcus lactis subsp. cremoris KW2

56.173

93.103

0.523
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.013

89.655

0.52

Multiple sequence alignment