Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FYK34_RS03170 Genome accession   NZ_CP043473
Coordinates   700055..701107 (-) Length   350 a.a.
NCBI ID   WP_043611947.1    Uniprot ID   A0A5C1DD38
Organism   Chromobacterium paludis strain IIBBL 257-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 695055..706107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK34_RS03150 (FYK34_03150) - 695841..696326 (-) 486 WP_149295014.1 GNAT family N-acetyltransferase -
  FYK34_RS03155 (FYK34_03155) alaS 696437..699070 (-) 2634 WP_149295015.1 alanine--tRNA ligase -
  FYK34_RS03160 (FYK34_03160) - 699134..699592 (-) 459 WP_149295016.1 SRPBCC domain-containing protein -
  FYK34_RS03165 (FYK34_03165) recX 699597..700055 (-) 459 WP_149295017.1 recombination regulator RecX -
  FYK34_RS03170 (FYK34_03170) recA 700055..701107 (-) 1053 WP_043611947.1 recombinase RecA Machinery gene
  FYK34_RS03175 (FYK34_03175) hrcA 701264..702286 (+) 1023 WP_149295018.1 heat-inducible transcriptional repressor HrcA -
  FYK34_RS03180 (FYK34_03180) mltB 702340..703371 (+) 1032 WP_174774495.1 lytic murein transglycosylase B -
  FYK34_RS03185 (FYK34_03185) dnaX 703468..705393 (+) 1926 WP_149295019.1 DNA polymerase III subunit gamma/tau -
  FYK34_RS03190 (FYK34_03190) - 705399..705737 (+) 339 WP_231137360.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37829.09 Da        Isoelectric Point: 4.8780

>NTDB_id=384380 FYK34_RS03170 WP_043611947.1 700055..701107(-) (recA) [Chromobacterium paludis strain IIBBL 257-1]
MASEDKSKALAAALAQIEKQFGKGSIMRMSDNQITENLQVISTGSLTLDLALGVGGLPRGRVVEIYGPESSGKTTLCLQA
VAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLVRSSGVDVIVVDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVIG
NDTRVKVVKNKVSPPFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIGQGKDNTREWLKANPAIADEI
ERKIREAVGVKIEINENQGDEEFADDAFDA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=384380 FYK34_RS03170 WP_043611947.1 700055..701107(-) (recA) [Chromobacterium paludis strain IIBBL 257-1]
ATGGCTTCCGAAGACAAGAGCAAGGCCTTGGCCGCCGCCCTCGCCCAGATTGAAAAGCAGTTCGGCAAGGGCTCGATCAT
GCGCATGAGCGACAACCAGATCACCGAAAACCTGCAAGTGATCTCCACCGGTTCGCTGACCCTGGACCTGGCGCTGGGCG
TCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAAATCTACGGCCCGGAATCGTCCGGTAAAACCACCCTGTGTCTGCAGGCC
GTGGCTGAAGCGCAAAAACTGGGCGGCACCTGCGCCTACATCGACGCCGAAAACGCGCTGGACCCGGTCTACGCGCAAAA
GCTGGGCGTCAACGTCGAAGACTTGCTGATCTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCTGTGACATGCTGG
TGCGCTCCAGCGGCGTGGACGTGATCGTGGTGGACTCCGTCGCCGCCCTGGTGCCCAAGGCGGAAATCGAAGGCGAGATG
GGCGACAGCCACGTCGGCCTGCAGGCCCGTTTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCACCAA
CACCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGCA
ATGCGCTGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCACCGGCGGCATCAAGAAGGGCGAGGAAGTGATCGGC
AACGACACCCGCGTCAAAGTGGTGAAGAACAAGGTCTCCCCGCCGTTCCGCCAAGCCGATTTCGAAATCCTGTACGGCGA
GGGCATCTCGCGCCAGGGCGAAATCATCGAGCTGGGCGTCAAGCACGGCTTCATCGACAAGTCCGGCGCCTGGTACGCCT
ACAACGGCCAGAAGATCGGCCAGGGCAAGGACAACACCCGCGAATGGCTGAAGGCCAACCCGGCCATCGCCGACGAAATC
GAGCGCAAGATCCGCGAAGCGGTGGGCGTGAAGATCGAAATCAATGAAAACCAGGGCGACGAAGAGTTCGCCGACGACGC
CTTCGACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C1DD38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

78.466

96.857

0.76
  recA Neisseria gonorrhoeae strain FA1090

78.466

96.857

0.76
  recA Neisseria gonorrhoeae MS11

78.466

96.857

0.76
  recA Ralstonia pseudosolanacearum GMI1000

78.025

89.714

0.7
  recA Pseudomonas stutzeri DSM 10701

75.466

92

0.694
  recA Glaesserella parasuis strain SC1401

72.477

93.429

0.677
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.308

92.857

0.671
  recA Vibrio cholerae strain A1552

72.308

92.857

0.671
  recA Acinetobacter baylyi ADP1

69.512

93.714

0.651
  recA Acinetobacter baumannii D1279779

69.659

92.286

0.643
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.072

95.429

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.832

96.857

0.609
  recA Helicobacter pylori 26695

63.855

94.857

0.606
  recA Helicobacter pylori strain NCTC11637

63.855

94.857

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

64.11

93.143

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

63.03

94.286

0.594
  recA Streptococcus mutans UA159

59.42

98.571

0.586
  recA Streptococcus pneumoniae R6

56.901

100

0.577
  recA Streptococcus pneumoniae Rx1

56.901

100

0.577
  recA Streptococcus pneumoniae D39

56.901

100

0.577
  recA Streptococcus pneumoniae TIGR4

56.901

100

0.577
  recA Streptococcus mitis NCTC 12261

58.601

98

0.574
  recA Lactococcus lactis subsp. cremoris KW2

60

94.286

0.566
  recA Streptococcus pyogenes NZ131

59.697

94.286

0.563
  recA Streptococcus mitis SK321

58.788

94.286

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.927

93.714

0.543

Multiple sequence alignment