Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FYC62_RS10605 Genome accession   NZ_CP043329
Coordinates   2414857..2415870 (+) Length   337 a.a.
NCBI ID   WP_149074915.1    Uniprot ID   A0A5C0VH90
Organism   Pedobacter aquae strain CJ43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2409857..2420870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYC62_RS10575 (FYC62_10575) - 2410484..2410747 (-) 264 WP_205943848.1 DUF86 domain-containing protein -
  FYC62_RS10580 (FYC62_10580) - 2410848..2411150 (-) 303 WP_149074910.1 nucleotidyltransferase family protein -
  FYC62_RS10585 (FYC62_10585) - 2411298..2411852 (-) 555 WP_149074911.1 hypothetical protein -
  FYC62_RS10590 (FYC62_10590) - 2411976..2412947 (+) 972 WP_149074912.1 polyprenyl synthetase family protein -
  FYC62_RS10595 (FYC62_10595) - 2412951..2414003 (+) 1053 WP_149074913.1 TerC family protein -
  FYC62_RS10600 (FYC62_10600) nth 2414012..2414764 (+) 753 WP_149074914.1 endonuclease III -
  FYC62_RS10605 (FYC62_10605) recA 2414857..2415870 (+) 1014 WP_149074915.1 recombinase RecA Machinery gene
  FYC62_RS10610 (FYC62_10610) - 2416022..2416558 (-) 537 WP_240534714.1 hypothetical protein -
  FYC62_RS10620 (FYC62_10620) - 2417247..2418515 (-) 1269 WP_149074917.1 DUF1501 domain-containing protein -
  FYC62_RS10625 (FYC62_10625) - 2418536..2420437 (-) 1902 WP_149074918.1 DUF1800 domain-containing protein -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36076.56 Da        Isoelectric Point: 5.3295

>NTDB_id=382916 FYC62_RS10605 WP_149074915.1 2414857..2415870(+) (recA) [Pedobacter aquae strain CJ43]
MSASNEKLKALQLTLDKLEKSYGKGTVMKLGDAAIEPMEAISTGSIGLDIALGIGGLPKGRVIEIYGPESSGKTTLATHV
IAEAQKAGGIAAIVDAEHAFDQFYAKKLGVDIENLLISQPDNGEQALEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEM
GDSKMGLQARLMSQALRKLTGTISKTKCCCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRRISQIKDSDEVSG
NRVKVKIVKNKVAPPFRIAEFDIMFGEGISKVGEIIDLGVDYGIIKKAGSWFSYGDTKLGQGRDGVKQLLHDNPELSDEL
EAKIRAAVTAAPLEEKE

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=382916 FYC62_RS10605 WP_149074915.1 2414857..2415870(+) (recA) [Pedobacter aquae strain CJ43]
ATGAGTGCCTCAAACGAAAAATTAAAAGCCCTACAGCTTACGCTGGATAAACTAGAAAAATCATACGGTAAAGGCACCGT
AATGAAATTAGGAGATGCTGCAATAGAACCAATGGAAGCTATTTCTACAGGTTCTATTGGTTTAGATATAGCCCTAGGAA
TTGGAGGTTTACCAAAAGGTAGAGTTATAGAAATATACGGTCCAGAATCATCTGGTAAAACAACTTTAGCAACACATGTA
ATTGCAGAAGCACAAAAAGCTGGCGGTATAGCTGCTATAGTTGATGCTGAGCATGCCTTTGACCAATTTTACGCTAAAAA
ATTAGGTGTTGATATAGAAAACCTTTTAATCTCACAGCCAGATAATGGTGAGCAAGCCTTAGAAATTGCAGATAACTTAA
TTCGCTCTGGTGCAATTGATGTTATCGTGATTGACTCTGTTGCTGCCCTTGTACCCAAAGGAGAGATAGAAGGCGAAATG
GGCGACTCTAAAATGGGCTTACAGGCTCGTTTAATGTCTCAAGCATTAAGAAAGTTAACAGGAACCATAAGTAAAACTAA
GTGCTGCTGTATCTTCATCAACCAGTTAAGGGATAAAATTGGGGTGATGTTTGGTAACCCAGAAACTACTACAGGTGGTA
ACGCTTTGAAATTTTACGCTTCTGTACGTTTAGATATCAGAAGAATATCTCAGATAAAAGATAGCGACGAAGTTTCTGGT
AACCGCGTTAAGGTTAAAATTGTTAAAAATAAGGTAGCTCCTCCTTTCCGTATTGCCGAGTTTGACATTATGTTTGGCGA
AGGTATTTCTAAAGTGGGTGAAATTATTGACCTTGGCGTAGATTACGGTATTATTAAAAAAGCAGGTTCTTGGTTTAGCT
ACGGCGATACCAAATTGGGCCAAGGAAGAGACGGTGTTAAACAATTATTACACGATAACCCCGAACTTTCTGATGAACTA
GAAGCTAAAATAAGAGCTGCTGTAACGGCTGCTCCCTTAGAAGAGAAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0VH90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

71.642

99.407

0.712
  recA Ralstonia pseudosolanacearum GMI1000

66.566

98.516

0.656
  recA Neisseria gonorrhoeae MS11

66.049

96.142

0.635
  recA Neisseria gonorrhoeae MS11

66.049

96.142

0.635
  recA Neisseria gonorrhoeae strain FA1090

66.049

96.142

0.635
  recA Acinetobacter baylyi ADP1

66.355

95.252

0.632
  recA Helicobacter pylori strain NCTC11637

61.383

100

0.632
  recA Helicobacter pylori 26695

61.095

100

0.629
  recA Acinetobacter baumannii D1279779

65.517

94.659

0.62
  recA Glaesserella parasuis strain SC1401

63.609

97.033

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.385

96.439

0.611
  recA Pseudomonas stutzeri DSM 10701

64.375

94.955

0.611
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

95.252

0.593
  recA Vibrio cholerae strain A1552

62.069

94.659

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.069

94.659

0.588
  recA Streptococcus mitis NCTC 12261

61.111

96.142

0.588
  recA Streptococcus pneumoniae R6

60.615

96.439

0.585
  recA Streptococcus pyogenes NZ131

60.615

96.439

0.585
  recA Streptococcus pneumoniae TIGR4

60.615

96.439

0.585
  recA Streptococcus pneumoniae Rx1

60.615

96.439

0.585
  recA Streptococcus pneumoniae D39

60.615

96.439

0.585
  recA Lactococcus lactis subsp. cremoris KW2

60.429

96.736

0.585
  recA Streptococcus mitis SK321

60.802

96.142

0.585
  recA Streptococcus mutans UA159

59.385

96.439

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

57.612

99.407

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.707

97.329

0.552

Multiple sequence alignment