Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | FYA40_RS07905 | Genome accession | NZ_CP043173 |
| Coordinates | 1565105..1566166 (-) | Length | 353 a.a. |
| NCBI ID | WP_005013565.1 | Uniprot ID | A0A158M9U3 |
| Organism | Bordetella holmesii strain F586 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1564508..1604934 | 1565105..1566166 | within | 0 |
Gene organization within MGE regions
Location: 1564508..1604934
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA40_RS07900 (FYA40_07930) | recX | 1564508..1565059 (-) | 552 | WP_005013566.1 | recombination regulator RecX | - |
| FYA40_RS07905 (FYA40_07935) | recA | 1565105..1566166 (-) | 1062 | WP_005013565.1 | recombinase RecA | Machinery gene |
| FYA40_RS07910 (FYA40_07940) | - | 1566507..1567202 (+) | 696 | WP_005013564.1 | response regulator transcription factor | - |
| FYA40_RS07915 (FYA40_07945) | - | 1567318..1568697 (+) | 1380 | WP_100225812.1 | sensor histidine kinase | - |
| FYA40_RS07920 (FYA40_07950) | - | 1568882..1570558 (+) | 1677 | WP_026087879.1 | MFS transporter | - |
| FYA40_RS07925 (FYA40_07955) | - | 1571032..1571250 (-) | 219 | WP_005013561.1 | hypothetical protein | - |
| FYA40_RS07930 (FYA40_07960) | - | 1571402..1572301 (+) | 900 | WP_005013559.1 | recombination-associated protein RdgC | - |
| FYA40_RS07935 (FYA40_07965) | - | 1572418..1573710 (-) | 1293 | WP_005013558.1 | aspartate carbamoyltransferase | - |
| FYA40_RS07940 (FYA40_07970) | - | 1573801..1574175 (-) | 375 | WP_005013556.1 | hypothetical protein | - |
| FYA40_RS07945 (FYA40_07975) | - | 1574185..1574613 (-) | 429 | WP_025341425.1 | BPTD_2524 family lipoprotein | - |
| FYA40_RS07950 (FYA40_07980) | - | 1574712..1574843 (-) | 132 | WP_005013553.1 | entericidin A/B family lipoprotein | - |
| FYA40_RS07955 (FYA40_07985) | - | 1575102..1575437 (-) | 336 | WP_005013552.1 | hypothetical protein | - |
| FYA40_RS07965 (FYA40_07995) | - | 1576122..1577558 (+) | 1437 | WP_025341423.1 | PLP-dependent aminotransferase family protein | - |
| FYA40_RS07970 (FYA40_08000) | - | 1577665..1577910 (-) | 246 | WP_005013550.1 | hypothetical protein | - |
| FYA40_RS07975 (FYA40_08005) | - | 1577971..1578342 (+) | 372 | WP_005013549.1 | hypothetical protein | - |
| FYA40_RS07980 (FYA40_08010) | bla | 1578347..1579090 (-) | 744 | WP_080601033.1 | class A beta-lactamase | - |
| FYA40_RS08000 (FYA40_08030) | istA | 1581519..1582529 (+) | 1011 | WP_025341421.1 | IS21 family transposase | - |
| FYA40_RS08005 (FYA40_08035) | istB | 1582526..1583296 (+) | 771 | WP_005013542.1 | IS21-like element helper ATPase IstB | - |
| FYA40_RS08010 (FYA40_08040) | - | 1583479..1584305 (-) | 827 | Protein_1527 | IS3 family transposase | - |
| FYA40_RS08015 (FYA40_08045) | - | 1584374..1584883 (-) | 510 | WP_005013539.1 | DUF1993 family protein | - |
| FYA40_RS08025 (FYA40_08055) | pstB | 1585711..1586487 (-) | 777 | WP_005013538.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| FYA40_RS08030 (FYA40_08060) | pstA | 1586515..1587372 (-) | 858 | WP_005013537.1 | phosphate ABC transporter permease PstA | - |
| FYA40_RS08035 (FYA40_08065) | pstC | 1587433..1588437 (-) | 1005 | Protein_1531 | phosphate ABC transporter permease subunit PstC | - |
| FYA40_RS08040 (FYA40_08070) | pstS | 1588559..1589596 (-) | 1038 | WP_005013536.1 | phosphate ABC transporter substrate-binding protein PstS | - |
| FYA40_RS08045 (FYA40_08075) | ppk1 | 1589816..1591888 (-) | 2073 | WP_005013535.1 | polyphosphate kinase 1 | - |
| FYA40_RS08050 (FYA40_08080) | ppx | 1592087..1593568 (+) | 1482 | WP_005013534.1 | exopolyphosphatase | - |
| FYA40_RS08055 (FYA40_08085) | - | 1593634..1594449 (-) | 816 | WP_005013533.1 | GNAT family N-acetyltransferase | - |
| FYA40_RS08060 (FYA40_08090) | glmM | 1594634..1595977 (-) | 1344 | WP_005013532.1 | phosphoglucosamine mutase | - |
| FYA40_RS08065 (FYA40_08095) | folP | 1595974..1596816 (-) | 843 | WP_005013531.1 | dihydropteroate synthase | - |
| FYA40_RS08070 (FYA40_08100) | ftsH | 1596844..1598730 (-) | 1887 | WP_005019299.1 | ATP-dependent zinc metalloprotease FtsH | - |
| FYA40_RS08075 (FYA40_08105) | - | 1598904..1599575 (-) | 672 | WP_005013529.1 | RlmE family RNA methyltransferase | - |
| FYA40_RS08080 (FYA40_08110) | - | 1599594..1600202 (+) | 609 | WP_005013528.1 | YhbY family RNA-binding protein | - |
| FYA40_RS08085 (FYA40_08115) | greA | 1600461..1600937 (-) | 477 | WP_005013527.1 | transcription elongation factor GreA | - |
| FYA40_RS08090 (FYA40_08120) | - | 1601292..1602512 (-) | 1221 | WP_005011985.1 | ISL3 family transposase | - |
| FYA40_RS08095 (FYA40_08130) | - | 1602578..1603006 (-) | 429 | WP_005013526.1 | helix-turn-helix domain-containing protein | - |
| FYA40_RS08100 (FYA40_08135) | - | 1603207..1604523 (-) | 1317 | WP_005013523.1 | solute carrier family 23 protein | - |
| FYA40_RS08105 (FYA40_08140) | - | 1604659..1604934 (+) | 276 | WP_005013521.1 | FlxA-like family protein | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37961.36 Da Isoelectric Point: 5.3510
>NTDB_id=381910 FYA40_RS07905 WP_005013565.1 1565105..1566166(-) (recA) [Bordetella holmesii strain F586]
MDDKTSKAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPKA
EIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK
GDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVVEKSGAWYSYSGNRIGQGKDNVREYLKEHK
AMAIEIENKVRENQGIVSRAAEFAPSAEERSED
MDDKTSKAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPKA
EIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK
GDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVVEKSGAWYSYSGNRIGQGKDNVREYLKEHK
AMAIEIENKVRENQGIVSRAAEFAPSAEERSED
Nucleotide
Download Length: 1062 bp
>NTDB_id=381910 FYA40_RS07905 WP_005013565.1 1565105..1566166(-) (recA) [Bordetella holmesii strain F586]
ATGGACGACAAAACCAGCAAGGCCGCATCGGAAAAAGCCAAGGCCCTGGCCGCAGCGCTCTCCCAGATCGAAAAGCAGTT
TGGCAAGGGCTCGATCATGCGCTACGGCGACAATGAGGTCGAGCACGACATCCAGGTCGTTTCCACCGGTTCGCTGGGTC
TCGACATCGCATTGGGCGTGGGTGGTCTGCCGCGGGGCCGTGTCGTAGAAATCTACGGCCCCGAATCCTCGGGCAAGACC
ACGCTGACACTGCAGGTCATCGCCGAAATGCAGAAGATCGGCGGCACTTGTGCCTTCGTCGATGCTGAGCACGCGCTGGA
TGTCCAATACGCCTCCAAGCTGGGTGTCAACCTGGCGGATCTGCTCATCTCCCAACCGGACACCGGCGAGCAAGCGCTCG
AGATCACCGATGCACTGGTGCGCTCCGGTTCGGTGGATCTTATCGTTATCGATTCGGTCGCGGCTCTGGTGCCCAAGGCC
GAAATCGAGGGCGAGATGGGCGACTCCTTGCCGGGTCTGCAGGCGCGCCTGATGAGCCAGGCTCTGCGCAAACTGACCGC
CACTATCAAGCGCACCAATTGTATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAACCCCG
AAACCACCACCGGGGGCAATGCACTGAAGTTCTATGCTTCTGTGCGCCTGGATATCCGTCGCATTGGCTCCATCAAAAAA
GGCGACGAAGTCGTCGGCAACGAAACTCGCGTCAAAGTCGTCAAAAATAAGGTGGCGCCACCGTTCAAGCAGGCCGAGTT
CGACATCATGTATGGTGCCGGCATTTCGCGCGAAGGCGAGATCATCGACCTGGGCGTAGCTGCCAACGTGGTTGAAAAAT
CTGGTGCTTGGTACAGCTATAGCGGCAATCGCATCGGCCAGGGCAAGGACAACGTGCGCGAGTATCTCAAAGAGCACAAG
GCCATGGCGATCGAGATCGAAAACAAGGTTCGCGAAAATCAAGGCATCGTCAGCCGGGCGGCAGAGTTTGCCCCCAGCGC
CGAAGAACGCTCCGAAGATTGA
ATGGACGACAAAACCAGCAAGGCCGCATCGGAAAAAGCCAAGGCCCTGGCCGCAGCGCTCTCCCAGATCGAAAAGCAGTT
TGGCAAGGGCTCGATCATGCGCTACGGCGACAATGAGGTCGAGCACGACATCCAGGTCGTTTCCACCGGTTCGCTGGGTC
TCGACATCGCATTGGGCGTGGGTGGTCTGCCGCGGGGCCGTGTCGTAGAAATCTACGGCCCCGAATCCTCGGGCAAGACC
ACGCTGACACTGCAGGTCATCGCCGAAATGCAGAAGATCGGCGGCACTTGTGCCTTCGTCGATGCTGAGCACGCGCTGGA
TGTCCAATACGCCTCCAAGCTGGGTGTCAACCTGGCGGATCTGCTCATCTCCCAACCGGACACCGGCGAGCAAGCGCTCG
AGATCACCGATGCACTGGTGCGCTCCGGTTCGGTGGATCTTATCGTTATCGATTCGGTCGCGGCTCTGGTGCCCAAGGCC
GAAATCGAGGGCGAGATGGGCGACTCCTTGCCGGGTCTGCAGGCGCGCCTGATGAGCCAGGCTCTGCGCAAACTGACCGC
CACTATCAAGCGCACCAATTGTATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAACCCCG
AAACCACCACCGGGGGCAATGCACTGAAGTTCTATGCTTCTGTGCGCCTGGATATCCGTCGCATTGGCTCCATCAAAAAA
GGCGACGAAGTCGTCGGCAACGAAACTCGCGTCAAAGTCGTCAAAAATAAGGTGGCGCCACCGTTCAAGCAGGCCGAGTT
CGACATCATGTATGGTGCCGGCATTTCGCGCGAAGGCGAGATCATCGACCTGGGCGTAGCTGCCAACGTGGTTGAAAAAT
CTGGTGCTTGGTACAGCTATAGCGGCAATCGCATCGGCCAGGGCAAGGACAACGTGCGCGAGTATCTCAAAGAGCACAAG
GCCATGGCGATCGAGATCGAAAACAAGGTTCGCGAAAATCAAGGCATCGTCAGCCGGGCGGCAGAGTTTGCCCCCAGCGC
CGAAGAACGCTCCGAAGATTGA
Similar proteins
Only experimentally validated proteins are listed.