Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FYA48_RS08175 Genome accession   NZ_CP043166
Coordinates   1625275..1626336 (+) Length   353 a.a.
NCBI ID   WP_005013565.1    Uniprot ID   A0A158M9U3
Organism   Bordetella holmesii strain F595     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1620275..1631336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA48_RS08160 (FYA48_08210) - 1620883..1622559 (-) 1677 WP_026087879.1 MFS transporter -
  FYA48_RS08165 (FYA48_08215) - 1622744..1624123 (-) 1380 WP_100225812.1 sensor histidine kinase -
  FYA48_RS08170 (FYA48_08220) - 1624239..1624934 (-) 696 WP_005013564.1 response regulator transcription factor -
  FYA48_RS08175 (FYA48_08225) recA 1625275..1626336 (+) 1062 WP_005013565.1 recombinase RecA Machinery gene
  FYA48_RS08180 (FYA48_08230) recX 1626382..1626933 (+) 552 WP_005013566.1 recombination regulator RecX -
  FYA48_RS08185 (FYA48_08235) - 1626940..1627860 (-) 921 WP_005013567.1 LysR family transcriptional regulator -
  FYA48_RS08190 (FYA48_08240) metE 1628000..1630297 (+) 2298 WP_005013568.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37961.36 Da        Isoelectric Point: 5.3510

>NTDB_id=381820 FYA48_RS08175 WP_005013565.1 1625275..1626336(+) (recA) [Bordetella holmesii strain F595]
MDDKTSKAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPKA
EIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK
GDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVVEKSGAWYSYSGNRIGQGKDNVREYLKEHK
AMAIEIENKVRENQGIVSRAAEFAPSAEERSED

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=381820 FYA48_RS08175 WP_005013565.1 1625275..1626336(+) (recA) [Bordetella holmesii strain F595]
ATGGACGACAAAACCAGCAAGGCCGCATCGGAAAAAGCCAAGGCCCTGGCCGCAGCGCTCTCCCAGATCGAAAAGCAGTT
TGGCAAGGGCTCGATCATGCGCTACGGCGACAATGAGGTCGAGCACGACATCCAGGTCGTTTCCACCGGTTCGCTGGGTC
TCGACATCGCATTGGGCGTGGGTGGTCTGCCGCGGGGCCGTGTCGTAGAAATCTACGGCCCCGAATCCTCGGGCAAGACC
ACGCTGACACTGCAGGTCATCGCCGAAATGCAGAAGATCGGCGGCACTTGTGCCTTCGTCGATGCTGAGCACGCGCTGGA
TGTCCAATACGCCTCCAAGCTGGGTGTCAACCTGGCGGATCTGCTCATCTCCCAACCGGACACCGGCGAGCAAGCGCTCG
AGATCACCGATGCACTGGTGCGCTCCGGTTCGGTGGATCTTATCGTTATCGATTCGGTCGCGGCTCTGGTGCCCAAGGCC
GAAATCGAGGGCGAGATGGGCGACTCCTTGCCGGGTCTGCAGGCGCGCCTGATGAGCCAGGCTCTGCGCAAACTGACCGC
CACTATCAAGCGCACCAATTGTATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAACCCCG
AAACCACCACCGGGGGCAATGCACTGAAGTTCTATGCTTCTGTGCGCCTGGATATCCGTCGCATTGGCTCCATCAAAAAA
GGCGACGAAGTCGTCGGCAACGAAACTCGCGTCAAAGTCGTCAAAAATAAGGTGGCGCCACCGTTCAAGCAGGCCGAGTT
CGACATCATGTATGGTGCCGGCATTTCGCGCGAAGGCGAGATCATCGACCTGGGCGTAGCTGCCAACGTGGTTGAAAAAT
CTGGTGCTTGGTACAGCTATAGCGGCAATCGCATCGGCCAGGGCAAGGACAACGTGCGCGAGTATCTCAAAGAGCACAAG
GCCATGGCGATCGAGATCGAAAACAAGGTTCGCGAAAATCAAGGCATCGTCAGCCGGGCGGCAGAGTTTGCCCCCAGCGC
CGAAGAACGCTCCGAAGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A158M9U3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.972

100

0.824
  recA Pseudomonas stutzeri DSM 10701

71.848

96.601

0.694
  recA Acinetobacter baylyi ADP1

68.272

100

0.683
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.832

90.935

0.671
  recA Vibrio cholerae strain A1552

73.832

90.935

0.671
  recA Neisseria gonorrhoeae MS11

71.951

92.918

0.669
  recA Neisseria gonorrhoeae MS11

71.951

92.918

0.669
  recA Neisseria gonorrhoeae strain FA1090

71.951

92.918

0.669
  recA Acinetobacter baumannii D1279779

73.209

90.935

0.666
  recA Glaesserella parasuis strain SC1401

71.651

90.935

0.652
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.671

94.618

0.612
  recA Helicobacter pylori 26695

62.209

97.45

0.606
  recA Helicobacter pylori strain NCTC11637

61.919

97.45

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

62.281

96.884

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

92.351

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

92.635

0.598
  recA Streptococcus pneumoniae R6

58.944

96.601

0.569
  recA Streptococcus pneumoniae Rx1

58.944

96.601

0.569
  recA Streptococcus pneumoniae D39

58.944

96.601

0.569
  recA Streptococcus pneumoniae TIGR4

58.944

96.601

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

91.501

0.567
  recA Lactococcus lactis subsp. cremoris KW2

58.651

96.601

0.567
  recA Streptococcus mutans UA159

56.215

100

0.564
  recA Streptococcus mitis SK321

58.358

96.601

0.564
  recA Streptococcus mitis NCTC 12261

58.358

96.601

0.564
  recA Streptococcus pyogenes NZ131

59.819

93.768

0.561

Multiple sequence alignment