Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | FYA69_RS10975 | Genome accession | NZ_CP043146 |
| Coordinates | 2186463..2187524 (-) | Length | 353 a.a. |
| NCBI ID | WP_005013565.1 | Uniprot ID | A0A158M9U3 |
| Organism | Bordetella holmesii strain H401 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2181226..2230080 | 2186463..2187524 | within | 0 |
Gene organization within MGE regions
Location: 2181226..2230080
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA69_RS10955 (FYA69_10945) | - | 2181226..2182446 (+) | 1221 | WP_005011985.1 | ISL3 family transposase | - |
| FYA69_RS10960 (FYA69_10950) | metE | 2182502..2184799 (-) | 2298 | WP_005013568.1 | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase | - |
| FYA69_RS10965 (FYA69_10955) | - | 2184939..2185859 (+) | 921 | WP_005013567.1 | LysR family transcriptional regulator | - |
| FYA69_RS10970 (FYA69_10960) | recX | 2185866..2186417 (-) | 552 | WP_005013566.1 | recombination regulator RecX | - |
| FYA69_RS10975 (FYA69_10965) | recA | 2186463..2187524 (-) | 1062 | WP_005013565.1 | recombinase RecA | Machinery gene |
| FYA69_RS10980 (FYA69_10970) | - | 2187865..2188560 (+) | 696 | WP_005013564.1 | response regulator transcription factor | - |
| FYA69_RS10985 (FYA69_10975) | - | 2188676..2190055 (+) | 1380 | WP_100225812.1 | sensor histidine kinase | - |
| FYA69_RS10990 (FYA69_10980) | - | 2190240..2191916 (+) | 1677 | WP_026087879.1 | MFS transporter | - |
| FYA69_RS10995 (FYA69_10985) | - | 2192390..2192608 (-) | 219 | WP_005013561.1 | hypothetical protein | - |
| FYA69_RS11000 (FYA69_10990) | - | 2192760..2193659 (+) | 900 | WP_005013559.1 | recombination-associated protein RdgC | - |
| FYA69_RS11005 (FYA69_10995) | - | 2193776..2195068 (-) | 1293 | WP_005013558.1 | aspartate carbamoyltransferase | - |
| FYA69_RS11010 (FYA69_11000) | - | 2195159..2195533 (-) | 375 | WP_005013556.1 | hypothetical protein | - |
| FYA69_RS11015 (FYA69_11005) | - | 2195543..2195971 (-) | 429 | WP_025341425.1 | BPTD_2524 family lipoprotein | - |
| FYA69_RS11020 (FYA69_11010) | - | 2196070..2196201 (-) | 132 | WP_005013553.1 | entericidin A/B family lipoprotein | - |
| FYA69_RS11025 (FYA69_11015) | - | 2196460..2196795 (-) | 336 | WP_005013552.1 | hypothetical protein | - |
| FYA69_RS11035 (FYA69_11025) | - | 2197480..2198916 (+) | 1437 | WP_025341423.1 | PLP-dependent aminotransferase family protein | - |
| FYA69_RS11040 (FYA69_11030) | - | 2199023..2199268 (-) | 246 | WP_005013550.1 | hypothetical protein | - |
| FYA69_RS11045 (FYA69_11035) | - | 2199329..2199700 (+) | 372 | WP_005013549.1 | hypothetical protein | - |
| FYA69_RS11050 (FYA69_11040) | bla | 2199705..2200448 (-) | 744 | WP_080601033.1 | class A beta-lactamase | - |
| FYA69_RS11070 (FYA69_11060) | istA | 2202877..2203887 (+) | 1011 | WP_025341421.1 | IS21 family transposase | - |
| FYA69_RS11075 (FYA69_11065) | istB | 2203884..2204654 (+) | 771 | WP_005013542.1 | IS21-like element helper ATPase IstB | - |
| FYA69_RS11080 (FYA69_11070) | - | 2204837..2205663 (-) | 827 | Protein_2122 | IS3 family transposase | - |
| FYA69_RS11085 (FYA69_11075) | - | 2205732..2206241 (-) | 510 | WP_005013539.1 | DUF1993 family protein | - |
| FYA69_RS11095 (FYA69_11085) | pstB | 2207069..2207845 (-) | 777 | WP_005013538.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| FYA69_RS11100 (FYA69_11090) | pstA | 2207873..2208730 (-) | 858 | WP_005013537.1 | phosphate ABC transporter permease PstA | - |
| FYA69_RS11105 (FYA69_11095) | pstC | 2208791..2209795 (-) | 1005 | Protein_2126 | phosphate ABC transporter permease subunit PstC | - |
| FYA69_RS11110 (FYA69_11100) | pstS | 2209917..2210954 (-) | 1038 | WP_005013536.1 | phosphate ABC transporter substrate-binding protein PstS | - |
| FYA69_RS11115 (FYA69_11105) | ppk1 | 2211174..2213246 (-) | 2073 | WP_005013535.1 | polyphosphate kinase 1 | - |
| FYA69_RS11120 (FYA69_11110) | ppx | 2213445..2214926 (+) | 1482 | WP_005013534.1 | exopolyphosphatase | - |
| FYA69_RS11125 (FYA69_11115) | - | 2214992..2215807 (-) | 816 | WP_005013533.1 | GNAT family N-acetyltransferase | - |
| FYA69_RS11130 (FYA69_11120) | glmM | 2215992..2217335 (-) | 1344 | WP_005013532.1 | phosphoglucosamine mutase | - |
| FYA69_RS11135 (FYA69_11125) | folP | 2217332..2218174 (-) | 843 | WP_005013531.1 | dihydropteroate synthase | - |
| FYA69_RS11140 (FYA69_11130) | ftsH | 2218202..2220088 (-) | 1887 | WP_005019299.1 | ATP-dependent zinc metalloprotease FtsH | - |
| FYA69_RS11145 (FYA69_11135) | - | 2220262..2220933 (-) | 672 | WP_005013529.1 | RlmE family RNA methyltransferase | - |
| FYA69_RS11150 (FYA69_11140) | - | 2220952..2221560 (+) | 609 | WP_005013528.1 | YhbY family RNA-binding protein | - |
| FYA69_RS11155 (FYA69_11145) | greA | 2221819..2222295 (-) | 477 | WP_005013527.1 | transcription elongation factor GreA | - |
| FYA69_RS11160 (FYA69_11150) | - | 2222650..2223870 (-) | 1221 | WP_005011985.1 | ISL3 family transposase | - |
| FYA69_RS11165 (FYA69_11160) | - | 2223936..2224364 (-) | 429 | WP_005013526.1 | helix-turn-helix domain-containing protein | - |
| FYA69_RS11170 (FYA69_11165) | - | 2224565..2225881 (-) | 1317 | WP_005013523.1 | solute carrier family 23 protein | - |
| FYA69_RS11175 (FYA69_11170) | - | 2226017..2226292 (+) | 276 | WP_005013521.1 | FlxA-like family protein | - |
| FYA69_RS11180 (FYA69_11175) | - | 2226390..2227712 (+) | 1323 | WP_005013519.1 | ABC transporter substrate-binding protein | - |
| FYA69_RS11185 (FYA69_11180) | - | 2227780..2229471 (+) | 1692 | WP_005013518.1 | ABC transporter permease | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37961.36 Da Isoelectric Point: 5.3510
>NTDB_id=381560 FYA69_RS10975 WP_005013565.1 2186463..2187524(-) (recA) [Bordetella holmesii strain H401]
MDDKTSKAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPKA
EIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK
GDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVVEKSGAWYSYSGNRIGQGKDNVREYLKEHK
AMAIEIENKVRENQGIVSRAAEFAPSAEERSED
MDDKTSKAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPKA
EIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK
GDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVVEKSGAWYSYSGNRIGQGKDNVREYLKEHK
AMAIEIENKVRENQGIVSRAAEFAPSAEERSED
Nucleotide
Download Length: 1062 bp
>NTDB_id=381560 FYA69_RS10975 WP_005013565.1 2186463..2187524(-) (recA) [Bordetella holmesii strain H401]
ATGGACGACAAAACCAGCAAGGCCGCATCGGAAAAAGCCAAGGCCCTGGCCGCAGCGCTCTCCCAGATCGAAAAGCAGTT
TGGCAAGGGCTCGATCATGCGCTACGGCGACAATGAGGTCGAGCACGACATCCAGGTCGTTTCCACCGGTTCGCTGGGTC
TCGACATCGCATTGGGCGTGGGTGGTCTGCCGCGGGGCCGTGTCGTAGAAATCTACGGCCCCGAATCCTCGGGCAAGACC
ACGCTGACACTGCAGGTCATCGCCGAAATGCAGAAGATCGGCGGCACTTGTGCCTTCGTCGATGCTGAGCACGCGCTGGA
TGTCCAATACGCCTCCAAGCTGGGTGTCAACCTGGCGGATCTGCTCATCTCCCAACCGGACACCGGCGAGCAAGCGCTCG
AGATCACCGATGCACTGGTGCGCTCCGGTTCGGTGGATCTTATCGTTATCGATTCGGTCGCGGCTCTGGTGCCCAAGGCC
GAAATCGAGGGCGAGATGGGCGACTCCTTGCCGGGTCTGCAGGCGCGCCTGATGAGCCAGGCTCTGCGCAAACTGACCGC
CACTATCAAGCGCACCAATTGTATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAACCCCG
AAACCACCACCGGGGGCAATGCACTGAAGTTCTATGCTTCTGTGCGCCTGGATATCCGTCGCATTGGCTCCATCAAAAAA
GGCGACGAAGTCGTCGGCAACGAAACTCGCGTCAAAGTCGTCAAAAATAAGGTGGCGCCACCGTTCAAGCAGGCCGAGTT
CGACATCATGTATGGTGCCGGCATTTCGCGCGAAGGCGAGATCATCGACCTGGGCGTAGCTGCCAACGTGGTTGAAAAAT
CTGGTGCTTGGTACAGCTATAGCGGCAATCGCATCGGCCAGGGCAAGGACAACGTGCGCGAGTATCTCAAAGAGCACAAG
GCCATGGCGATCGAGATCGAAAACAAGGTTCGCGAAAATCAAGGCATCGTCAGCCGGGCGGCAGAGTTTGCCCCCAGCGC
CGAAGAACGCTCCGAAGATTGA
ATGGACGACAAAACCAGCAAGGCCGCATCGGAAAAAGCCAAGGCCCTGGCCGCAGCGCTCTCCCAGATCGAAAAGCAGTT
TGGCAAGGGCTCGATCATGCGCTACGGCGACAATGAGGTCGAGCACGACATCCAGGTCGTTTCCACCGGTTCGCTGGGTC
TCGACATCGCATTGGGCGTGGGTGGTCTGCCGCGGGGCCGTGTCGTAGAAATCTACGGCCCCGAATCCTCGGGCAAGACC
ACGCTGACACTGCAGGTCATCGCCGAAATGCAGAAGATCGGCGGCACTTGTGCCTTCGTCGATGCTGAGCACGCGCTGGA
TGTCCAATACGCCTCCAAGCTGGGTGTCAACCTGGCGGATCTGCTCATCTCCCAACCGGACACCGGCGAGCAAGCGCTCG
AGATCACCGATGCACTGGTGCGCTCCGGTTCGGTGGATCTTATCGTTATCGATTCGGTCGCGGCTCTGGTGCCCAAGGCC
GAAATCGAGGGCGAGATGGGCGACTCCTTGCCGGGTCTGCAGGCGCGCCTGATGAGCCAGGCTCTGCGCAAACTGACCGC
CACTATCAAGCGCACCAATTGTATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAACCCCG
AAACCACCACCGGGGGCAATGCACTGAAGTTCTATGCTTCTGTGCGCCTGGATATCCGTCGCATTGGCTCCATCAAAAAA
GGCGACGAAGTCGTCGGCAACGAAACTCGCGTCAAAGTCGTCAAAAATAAGGTGGCGCCACCGTTCAAGCAGGCCGAGTT
CGACATCATGTATGGTGCCGGCATTTCGCGCGAAGGCGAGATCATCGACCTGGGCGTAGCTGCCAACGTGGTTGAAAAAT
CTGGTGCTTGGTACAGCTATAGCGGCAATCGCATCGGCCAGGGCAAGGACAACGTGCGCGAGTATCTCAAAGAGCACAAG
GCCATGGCGATCGAGATCGAAAACAAGGTTCGCGAAAATCAAGGCATCGTCAGCCGGGCGGCAGAGTTTGCCCCCAGCGC
CGAAGAACGCTCCGAAGATTGA
Similar proteins
Only experimentally validated proteins are listed.