Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FB2170_RS06720 Genome accession   NC_014472
Coordinates   1509713..1510717 (+) Length   334 a.a.
NCBI ID   WP_041632704.1    Uniprot ID   -
Organism   Maribacter sp. HTCC2170     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1504713..1515717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FB2170_RS06695 (FB2170_05475) - 1504980..1505465 (-) 486 WP_013305776.1 gliding motility lipoprotein GldH -
  FB2170_RS06700 (FB2170_05480) - 1505458..1506624 (-) 1167 WP_041633095.1 stage 0 sporulation family protein -
  FB2170_RS06705 (FB2170_05490) - 1506763..1507794 (-) 1032 WP_013305779.1 rhodanese-related sulfurtransferase -
  FB2170_RS06710 (FB2170_05495) - 1507850..1508080 (-) 231 WP_013305780.1 ferredoxin -
  FB2170_RS06715 (FB2170_05500) - 1508080..1509321 (-) 1242 WP_013305781.1 peptidase U32 family protein -
  FB2170_RS06720 (FB2170_05505) recA 1509713..1510717 (+) 1005 WP_041632704.1 recombinase RecA Machinery gene
  FB2170_RS06725 (FB2170_05510) - 1510885..1511304 (+) 420 WP_041632705.1 hypothetical protein -
  FB2170_RS06730 (FB2170_05515) - 1511331..1511897 (+) 567 WP_041632706.1 RNA polymerase sigma factor -
  FB2170_RS06735 - 1511956..1513458 (+) 1503 WP_041632707.1 outer membrane beta-barrel protein -
  FB2170_RS06740 (FB2170_05525) - 1513583..1514086 (+) 504 WP_013305785.1 GNAT family N-acetyltransferase -
  FB2170_RS06745 (FB2170_05530) - 1514092..1514832 (-) 741 WP_013305786.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36222.55 Da        Isoelectric Point: 5.8305

>NTDB_id=38149 FB2170_RS06720 WP_041632704.1 1509713..1510717(+) (recA) [Maribacter sp. HTCC2170]
MSSEKEAKLKALKLTLDKLDKTYGKGAVMKMGDSVVEDVEVIPSGSLGLDIALGVGGYPRGRVIEIYGPESSGKTTLTLH
AIAEAQKNGGIAAFIDAEHAFDRFYAEKLGIDIDNLIISQPDNGEQALEIADNLIRSGAIDIVVVDSVAALTPKSEIEGE
MGDSKMGLHARLMSQALRKLTGSISKTHCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDTDGAV
RGNKTRVKVVKNKVAPPFRLAEFDIMYGEGISKVGEIIDLGVEYEIIKKSGSWFSYGDTKLGQGRDAVKALLNDNPELYE
ELDVKIREAITTVK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=38149 FB2170_RS06720 WP_041632704.1 1509713..1510717(+) (recA) [Maribacter sp. HTCC2170]
ATGAGTTCTGAAAAAGAAGCAAAATTAAAAGCATTAAAACTAACCCTTGATAAATTGGACAAGACTTACGGCAAAGGTGC
CGTAATGAAAATGGGAGATAGTGTTGTAGAAGATGTTGAAGTAATCCCATCTGGTTCTCTAGGTCTTGATATTGCCCTCG
GTGTTGGTGGTTACCCACGCGGCAGGGTTATTGAAATTTATGGTCCCGAATCTTCTGGTAAGACGACCTTAACACTACAT
GCGATTGCAGAAGCACAAAAAAATGGTGGAATAGCAGCTTTTATTGATGCGGAACATGCTTTTGATCGTTTTTATGCCGA
AAAATTAGGTATTGATATTGACAACCTCATTATTTCGCAACCAGACAATGGTGAACAGGCCTTGGAAATTGCTGATAATT
TAATCCGTTCAGGAGCAATTGATATCGTAGTGGTCGATTCTGTTGCCGCCTTAACTCCAAAGAGCGAGATTGAAGGTGAA
ATGGGAGACTCAAAAATGGGGCTGCATGCAAGACTAATGTCACAAGCCTTAAGAAAATTGACAGGGTCAATCAGTAAAAC
CCATTGCACAGTTATATTTATCAACCAGTTAAGAGAAAAAATTGGGGTTATGTTCGGTAATCCAGAAACTACAACAGGTG
GTAATGCTCTTAAATTCTATGCCTCCGTTCGTTTGGATATTCGTCGTTCAACACAAATCAAAGATACAGACGGTGCCGTG
CGAGGAAACAAAACAAGAGTAAAAGTTGTTAAAAACAAAGTTGCCCCGCCCTTTAGATTAGCCGAGTTCGATATCATGTA
TGGTGAAGGTATTTCTAAGGTTGGTGAAATCATAGATTTAGGTGTTGAATATGAAATCATAAAGAAAAGTGGTTCTTGGT
TCAGTTATGGTGATACTAAACTTGGTCAAGGTAGAGATGCTGTAAAAGCGTTACTAAATGATAATCCAGAATTATATGAA
GAACTTGATGTAAAAATTCGTGAGGCCATTACAACAGTAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

77.545

100

0.775
  recA Ralstonia pseudosolanacearum GMI1000

67.949

93.413

0.635
  recA Neisseria gonorrhoeae MS11

68.167

93.114

0.635
  recA Neisseria gonorrhoeae MS11

68.167

93.114

0.635
  recA Neisseria gonorrhoeae strain FA1090

68.167

93.114

0.635
  recA Acinetobacter baumannii D1279779

64.22

97.904

0.629
  recA Helicobacter pylori 26695

64.11

97.605

0.626
  recA Helicobacter pylori strain NCTC11637

64.11

97.605

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

65.409

95.21

0.623
  recA Acinetobacter baylyi ADP1

64

97.305

0.623
  recA Glaesserella parasuis strain SC1401

62.918

98.503

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.272

97.006

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.462

97.305

0.608
  recA Vibrio cholerae strain A1552

62.462

97.305

0.608
  recA Pseudomonas stutzeri DSM 10701

63.043

96.407

0.608
  recA Streptococcus pyogenes NZ131

62.346

97.006

0.605
  recA Streptococcus mitis NCTC 12261

62.928

96.108

0.605
  recA Streptococcus mitis SK321

62.928

96.108

0.605
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

97.305

0.596
  recA Streptococcus pneumoniae Rx1

61.994

96.108

0.596
  recA Streptococcus pneumoniae R6

61.994

96.108

0.596
  recA Streptococcus pneumoniae TIGR4

61.994

96.108

0.596
  recA Streptococcus pneumoniae D39

61.994

96.108

0.596
  recA Lactococcus lactis subsp. cremoris KW2

60.991

96.707

0.59
  recA Streptococcus mutans UA159

61.18

96.407

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.321

96.108

0.551

Multiple sequence alignment