Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PB2503_RS11270 Genome accession   NC_014414
Coordinates   2404625..2405707 (-) Length   360 a.a.
NCBI ID   WP_013301383.1    Uniprot ID   -
Organism   Parvularcula bermudensis HTCC2503     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2399625..2410707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PB2503_RS11255 (PB2503_11809) nuoL 2401211..2403394 (-) 2184 WP_013301380.1 NADH-quinone oxidoreductase subunit L -
  PB2503_RS11260 (PB2503_11814) nuoK 2403402..2403707 (-) 306 WP_013301381.1 NADH-quinone oxidoreductase subunit NuoK -
  PB2503_RS11265 (PB2503_11819) - 2403711..2404313 (-) 603 WP_013301382.1 NADH-quinone oxidoreductase subunit J -
  PB2503_RS11270 (PB2503_11824) recA 2404625..2405707 (-) 1083 WP_013301383.1 recombinase RecA Machinery gene
  PB2503_RS11275 (PB2503_11834) glpK 2405912..2407390 (-) 1479 WP_013301385.1 glycerol kinase GlpK -
  PB2503_RS11280 (PB2503_11839) - 2407520..2407807 (+) 288 WP_013301386.1 PilZ domain-containing protein -
  PB2503_RS11285 (PB2503_11844) - 2407909..2409042 (+) 1134 WP_013301387.1 sensor domain-containing diguanylate cyclase -
  PB2503_RS11290 (PB2503_11849) - 2409099..2410082 (+) 984 WP_013301388.1 cysteine synthase A -
  PB2503_RS11295 (PB2503_11854) - 2410070..2410621 (+) 552 WP_013301389.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38006.50 Da        Isoelectric Point: 5.0263

>NTDB_id=38142 PB2503_RS11270 WP_013301383.1 2404625..2405707(-) (recA) [Parvularcula bermudensis HTCC2503]
MSANFKVIDGGMDKSKALEAALSQIDKAFGKGSVMKLGSQDKIVQIEGISTGSLGLDIALGIGGLPKGRIVEIYGPESSG
KTTLALHCAAESQKAGGTAAFIDAEHALDPIYASKLGVKLDELLISQPDTGEQALEIADTLVRSGAIDVLVIDSVAALTP
KAELEGEMGDSLPGLQARLMSQALRKLTGSISRSNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAL
KARDEVIGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKVGELLDLGVLGNIVEKSGSWYSYNSERIGQGRDNAKSFLKD
NPDIAAAIEQAVRRNAGLIADDMLVGPKDNDEVADDGTGG

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=38142 PB2503_RS11270 WP_013301383.1 2404625..2405707(-) (recA) [Parvularcula bermudensis HTCC2503]
ATGTCGGCAAATTTTAAGGTAATCGACGGCGGTATGGATAAATCAAAAGCGCTCGAAGCGGCCCTGTCACAGATCGACAA
GGCTTTCGGCAAGGGATCTGTGATGAAACTCGGATCCCAGGACAAAATTGTCCAAATCGAGGGGATTTCGACGGGGTCTT
TGGGCCTCGATATCGCCTTGGGGATCGGCGGGTTGCCGAAGGGACGGATCGTCGAGATCTATGGACCTGAAAGTTCCGGG
AAGACGACGCTGGCGCTTCATTGCGCAGCGGAATCGCAGAAAGCGGGGGGGACGGCAGCCTTTATCGATGCCGAGCATGC
GTTGGACCCCATCTATGCCTCAAAATTGGGGGTCAAGCTCGATGAATTGCTGATTTCCCAGCCCGATACGGGGGAGCAAG
CCCTTGAGATTGCCGATACCCTTGTCCGGTCGGGGGCGATCGATGTGCTGGTAATCGATTCGGTCGCGGCCCTGACGCCG
AAGGCTGAACTCGAAGGGGAGATGGGCGATAGCCTCCCCGGCCTCCAGGCGCGATTGATGAGCCAGGCATTGCGGAAGCT
GACGGGGTCGATTTCACGATCCAATTGCCTTGTGATTTTCATCAATCAAATACGGATGAAAATCGGGGTGATGTTCGGGT
CGCCCGAAACCACGACGGGGGGGAATGCCCTCAAATTCTACGCCAGCGTCCGGCTCGATATTCGGCGCATCGGGGCCCTC
AAGGCACGGGACGAGGTCATCGGTAACCAGACCCGGGTGAAAGTCGTGAAAAACAAGGTTGCCCCTCCTTTCAAGCAAGT
CGAATTCGATATCATGTATGGAGAAGGTATCTCCAAAGTCGGCGAATTGCTCGACCTGGGGGTATTAGGGAATATCGTCG
AAAAATCAGGAAGTTGGTACAGCTATAATTCCGAGCGAATCGGTCAGGGTCGGGATAATGCCAAATCTTTCCTGAAGGAT
AATCCAGATATTGCCGCCGCCATTGAGCAAGCGGTGCGGCGCAATGCGGGCCTGATCGCCGATGATATGCTTGTCGGCCC
CAAAGACAACGATGAAGTCGCGGATGACGGCACGGGAGGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

68.895

95.556

0.658
  recA Ralstonia pseudosolanacearum GMI1000

73.567

87.222

0.642
  recA Pseudomonas stutzeri DSM 10701

71.34

89.167

0.636
  recA Acinetobacter baumannii D1279779

71.118

89.444

0.636
  recA Glaesserella parasuis strain SC1401

71.25

88.889

0.633
  recA Neisseria gonorrhoeae MS11

70.717

89.167

0.631
  recA Neisseria gonorrhoeae MS11

70.717

89.167

0.631
  recA Neisseria gonorrhoeae strain FA1090

70.717

89.167

0.631
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.181

95.278

0.631
  recA Vibrio cholerae strain A1552

66.181

95.278

0.631
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

68.502

90.833

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

90.556

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.118

94.444

0.606
  recA Helicobacter pylori strain NCTC11637

65.031

90.556

0.589
  recA Helicobacter pylori 26695

64.724

90.556

0.586
  recA Streptococcus mitis SK321

60.172

96.944

0.583
  recA Streptococcus mutans UA159

59.155

98.611

0.583
  recA Streptococcus mitis NCTC 12261

59.885

96.944

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

63.303

90.833

0.575
  recA Streptococcus pneumoniae Rx1

58.689

97.5

0.572
  recA Streptococcus pneumoniae D39

58.689

97.5

0.572
  recA Streptococcus pneumoniae R6

58.689

97.5

0.572
  recA Streptococcus pneumoniae TIGR4

58.689

97.5

0.572
  recA Lactococcus lactis subsp. cremoris KW2

60.534

93.611

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.422

89.444

0.558
  recA Streptococcus pyogenes NZ131

60.241

92.222

0.556

Multiple sequence alignment