Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPPN120_RS00090 Genome accession   NC_017378
Coordinates   13462..13743 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   B5Z6D6
Organism   Helicobacter pylori Puno120     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8462..18743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPN120_RS00070 (HPPN120_00050) groES 9038..9394 (-) 357 WP_000671941.1 co-chaperone GroES -
  HPPN120_RS00075 (HPPN120_00055) dnaG 9669..11348 (+) 1680 WP_000601612.1 DNA primase -
  HPPN120_RS00080 (HPPN120_00060) - 11345..12397 (+) 1053 WP_000802573.1 MnmA/TRMU family protein -
  HPPN120_RS00085 (HPPN120_00070) - 12489..13316 (+) 828 WP_001154909.1 DUF5718 family protein -
  HPPN120_RS00090 (HPPN120_00075) comB2 13462..13743 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPPN120_RS00095 (HPPN120_00080) comB3 13743..14006 (+) 264 WP_000584962.1 hypothetical protein Machinery gene
  HPPN120_RS00100 (HPPN120_00085) comB4 14008..16371 (+) 2364 WP_000890538.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPPN120_RS00105 (HPPN120_00090) - 16592..18052 (+) 1461 WP_195182491.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=38142 HPPN120_RS00090 WP_001272686.1 13462..13743(+) (comB2) [Helicobacter pylori Puno120]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=38142 HPPN120_RS00090 WP_001272686.1 13462..13743(+) (comB2) [Helicobacter pylori Puno120]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTGA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z6D6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment