Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | FYA79_RS08160 | Genome accession | NZ_CP043136 |
| Coordinates | 1623193..1624254 (+) | Length | 353 a.a. |
| NCBI ID | WP_005013565.1 | Uniprot ID | A0A158M9U3 |
| Organism | Bordetella holmesii strain H620 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1580152..1629491 | 1623193..1624254 | within | 0 |
Gene organization within MGE regions
Location: 1580152..1629491
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA79_RS07945 (FYA79_07985) | - | 1580152..1581242 (-) | 1091 | Protein_1521 | ABC transporter ATP-binding protein | - |
| FYA79_RS07950 (FYA79_07990) | - | 1581246..1582937 (-) | 1692 | WP_005013518.1 | ABC transporter permease | - |
| FYA79_RS07955 (FYA79_07995) | - | 1583005..1584327 (-) | 1323 | WP_005013519.1 | ABC transporter substrate-binding protein | - |
| FYA79_RS07960 (FYA79_08000) | - | 1584425..1584700 (-) | 276 | WP_005013521.1 | FlxA-like family protein | - |
| FYA79_RS07965 (FYA79_08005) | - | 1584836..1586152 (+) | 1317 | WP_005013523.1 | solute carrier family 23 protein | - |
| FYA79_RS07970 (FYA79_08010) | - | 1586353..1586781 (+) | 429 | WP_005013526.1 | helix-turn-helix domain-containing protein | - |
| FYA79_RS07975 (FYA79_08020) | - | 1586847..1588067 (+) | 1221 | WP_005011985.1 | ISL3 family transposase | - |
| FYA79_RS07980 (FYA79_08025) | greA | 1588422..1588898 (+) | 477 | WP_005013527.1 | transcription elongation factor GreA | - |
| FYA79_RS07985 (FYA79_08030) | - | 1589157..1589765 (-) | 609 | WP_005013528.1 | YhbY family RNA-binding protein | - |
| FYA79_RS07990 (FYA79_08035) | - | 1589784..1590455 (+) | 672 | WP_005013529.1 | RlmE family RNA methyltransferase | - |
| FYA79_RS07995 (FYA79_08040) | ftsH | 1590629..1592515 (+) | 1887 | WP_005019299.1 | ATP-dependent zinc metalloprotease FtsH | - |
| FYA79_RS08000 (FYA79_08045) | folP | 1592543..1593385 (+) | 843 | WP_005013531.1 | dihydropteroate synthase | - |
| FYA79_RS08005 (FYA79_08050) | glmM | 1593382..1594725 (+) | 1344 | WP_005013532.1 | phosphoglucosamine mutase | - |
| FYA79_RS08010 (FYA79_08055) | - | 1594910..1595725 (+) | 816 | WP_005013533.1 | GNAT family N-acetyltransferase | - |
| FYA79_RS08015 (FYA79_08060) | ppx | 1595791..1597272 (-) | 1482 | WP_005013534.1 | exopolyphosphatase | - |
| FYA79_RS08020 (FYA79_08065) | ppk1 | 1597471..1599543 (+) | 2073 | WP_005013535.1 | polyphosphate kinase 1 | - |
| FYA79_RS08025 (FYA79_08070) | pstS | 1599763..1600800 (+) | 1038 | WP_005013536.1 | phosphate ABC transporter substrate-binding protein PstS | - |
| FYA79_RS08030 (FYA79_08075) | pstC | 1600922..1601926 (+) | 1005 | Protein_1538 | phosphate ABC transporter permease subunit PstC | - |
| FYA79_RS08035 (FYA79_08080) | pstA | 1601987..1602844 (+) | 858 | WP_005013537.1 | phosphate ABC transporter permease PstA | - |
| FYA79_RS08040 (FYA79_08085) | pstB | 1602872..1603648 (+) | 777 | WP_005013538.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| FYA79_RS08050 (FYA79_08095) | - | 1604476..1604985 (+) | 510 | WP_005013539.1 | DUF1993 family protein | - |
| FYA79_RS08055 (FYA79_08100) | - | 1605054..1605880 (+) | 827 | Protein_1542 | IS3 family transposase | - |
| FYA79_RS08060 (FYA79_08105) | istB | 1606063..1606833 (-) | 771 | WP_005013542.1 | IS21-like element helper ATPase IstB | - |
| FYA79_RS08065 (FYA79_08110) | istA | 1606830..1607840 (-) | 1011 | WP_025341421.1 | IS21 family transposase | - |
| FYA79_RS08070 (FYA79_08115) | - | 1607899..1608980 (+) | 1082 | WP_101557920.1 | IS3 family transposase | - |
| FYA79_RS08080 (FYA79_08125) | - | 1609148..1610268 (+) | 1121 | WP_370510763.1 | IS3 family transposase | - |
| FYA79_RS08085 (FYA79_08130) | bla | 1610269..1611012 (+) | 744 | WP_080601033.1 | class A beta-lactamase | - |
| FYA79_RS08090 (FYA79_08135) | - | 1611017..1611388 (-) | 372 | WP_005013549.1 | hypothetical protein | - |
| FYA79_RS08095 (FYA79_08140) | - | 1611449..1611694 (+) | 246 | WP_005013550.1 | hypothetical protein | - |
| FYA79_RS08100 (FYA79_08145) | - | 1611801..1613237 (-) | 1437 | WP_025341423.1 | PLP-dependent aminotransferase family protein | - |
| FYA79_RS08110 (FYA79_08155) | - | 1613922..1614257 (+) | 336 | WP_005013552.1 | hypothetical protein | - |
| FYA79_RS08115 (FYA79_08160) | - | 1614516..1614647 (+) | 132 | WP_005013553.1 | entericidin A/B family lipoprotein | - |
| FYA79_RS08120 (FYA79_08165) | - | 1614746..1615174 (+) | 429 | WP_025341425.1 | BPTD_2524 family lipoprotein | - |
| FYA79_RS08125 (FYA79_08170) | - | 1615184..1615558 (+) | 375 | WP_005013556.1 | hypothetical protein | - |
| FYA79_RS08130 (FYA79_08175) | - | 1615649..1616941 (+) | 1293 | WP_005013558.1 | aspartate carbamoyltransferase | - |
| FYA79_RS08135 (FYA79_08180) | - | 1617058..1617957 (-) | 900 | WP_005013559.1 | recombination-associated protein RdgC | - |
| FYA79_RS08140 (FYA79_08185) | - | 1618109..1618327 (+) | 219 | WP_005013561.1 | hypothetical protein | - |
| FYA79_RS08145 (FYA79_08190) | - | 1618801..1620477 (-) | 1677 | WP_026087879.1 | MFS transporter | - |
| FYA79_RS08150 (FYA79_08195) | - | 1620662..1622041 (-) | 1380 | WP_100225812.1 | sensor histidine kinase | - |
| FYA79_RS08155 (FYA79_08200) | - | 1622157..1622852 (-) | 696 | WP_005013564.1 | response regulator transcription factor | - |
| FYA79_RS08160 (FYA79_08205) | recA | 1623193..1624254 (+) | 1062 | WP_005013565.1 | recombinase RecA | Machinery gene |
| FYA79_RS08165 (FYA79_08210) | recX | 1624300..1624851 (+) | 552 | WP_005013566.1 | recombination regulator RecX | - |
| FYA79_RS08170 (FYA79_08215) | - | 1624858..1625778 (-) | 921 | WP_005013567.1 | LysR family transcriptional regulator | - |
| FYA79_RS08175 (FYA79_08220) | metE | 1625918..1628215 (+) | 2298 | WP_005013568.1 | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase | - |
| FYA79_RS08180 (FYA79_08225) | - | 1628271..1629491 (-) | 1221 | WP_005011985.1 | ISL3 family transposase | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37961.36 Da Isoelectric Point: 5.3510
>NTDB_id=381419 FYA79_RS08160 WP_005013565.1 1623193..1624254(+) (recA) [Bordetella holmesii strain H620]
MDDKTSKAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPKA
EIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK
GDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVVEKSGAWYSYSGNRIGQGKDNVREYLKEHK
AMAIEIENKVRENQGIVSRAAEFAPSAEERSED
MDDKTSKAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPKA
EIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK
GDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVVEKSGAWYSYSGNRIGQGKDNVREYLKEHK
AMAIEIENKVRENQGIVSRAAEFAPSAEERSED
Nucleotide
Download Length: 1062 bp
>NTDB_id=381419 FYA79_RS08160 WP_005013565.1 1623193..1624254(+) (recA) [Bordetella holmesii strain H620]
ATGGACGACAAAACCAGCAAGGCCGCATCGGAAAAAGCCAAGGCCCTGGCCGCAGCGCTCTCCCAGATCGAAAAGCAGTT
TGGCAAGGGCTCGATCATGCGCTACGGCGACAATGAGGTCGAGCACGACATCCAGGTCGTTTCCACCGGTTCGCTGGGTC
TCGACATCGCATTGGGCGTGGGTGGTCTGCCGCGGGGCCGTGTCGTAGAAATCTACGGCCCCGAATCCTCGGGCAAGACC
ACGCTGACACTGCAGGTCATCGCCGAAATGCAGAAGATCGGCGGCACTTGTGCCTTCGTCGATGCTGAGCACGCGCTGGA
TGTCCAATACGCCTCCAAGCTGGGTGTCAACCTGGCGGATCTGCTCATCTCCCAACCGGACACCGGCGAGCAAGCGCTCG
AGATCACCGATGCACTGGTGCGCTCCGGTTCGGTGGATCTTATCGTTATCGATTCGGTCGCGGCTCTGGTGCCCAAGGCC
GAAATCGAGGGCGAGATGGGCGACTCCTTGCCGGGTCTGCAGGCGCGCCTGATGAGCCAGGCTCTGCGCAAACTGACCGC
CACTATCAAGCGCACCAATTGTATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAACCCCG
AAACCACCACCGGGGGCAATGCACTGAAGTTCTATGCTTCTGTGCGCCTGGATATCCGTCGCATTGGCTCCATCAAAAAA
GGCGACGAAGTCGTCGGCAACGAAACTCGCGTCAAAGTCGTCAAAAATAAGGTGGCGCCACCGTTCAAGCAGGCCGAGTT
CGACATCATGTATGGTGCCGGCATTTCGCGCGAAGGCGAGATCATCGACCTGGGCGTAGCTGCCAACGTGGTTGAAAAAT
CTGGTGCTTGGTACAGCTATAGCGGCAATCGCATCGGCCAGGGCAAGGACAACGTGCGCGAGTATCTCAAAGAGCACAAG
GCCATGGCGATCGAGATCGAAAACAAGGTTCGCGAAAATCAAGGCATCGTCAGCCGGGCGGCAGAGTTTGCCCCCAGCGC
CGAAGAACGCTCCGAAGATTGA
ATGGACGACAAAACCAGCAAGGCCGCATCGGAAAAAGCCAAGGCCCTGGCCGCAGCGCTCTCCCAGATCGAAAAGCAGTT
TGGCAAGGGCTCGATCATGCGCTACGGCGACAATGAGGTCGAGCACGACATCCAGGTCGTTTCCACCGGTTCGCTGGGTC
TCGACATCGCATTGGGCGTGGGTGGTCTGCCGCGGGGCCGTGTCGTAGAAATCTACGGCCCCGAATCCTCGGGCAAGACC
ACGCTGACACTGCAGGTCATCGCCGAAATGCAGAAGATCGGCGGCACTTGTGCCTTCGTCGATGCTGAGCACGCGCTGGA
TGTCCAATACGCCTCCAAGCTGGGTGTCAACCTGGCGGATCTGCTCATCTCCCAACCGGACACCGGCGAGCAAGCGCTCG
AGATCACCGATGCACTGGTGCGCTCCGGTTCGGTGGATCTTATCGTTATCGATTCGGTCGCGGCTCTGGTGCCCAAGGCC
GAAATCGAGGGCGAGATGGGCGACTCCTTGCCGGGTCTGCAGGCGCGCCTGATGAGCCAGGCTCTGCGCAAACTGACCGC
CACTATCAAGCGCACCAATTGTATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAACCCCG
AAACCACCACCGGGGGCAATGCACTGAAGTTCTATGCTTCTGTGCGCCTGGATATCCGTCGCATTGGCTCCATCAAAAAA
GGCGACGAAGTCGTCGGCAACGAAACTCGCGTCAAAGTCGTCAAAAATAAGGTGGCGCCACCGTTCAAGCAGGCCGAGTT
CGACATCATGTATGGTGCCGGCATTTCGCGCGAAGGCGAGATCATCGACCTGGGCGTAGCTGCCAACGTGGTTGAAAAAT
CTGGTGCTTGGTACAGCTATAGCGGCAATCGCATCGGCCAGGGCAAGGACAACGTGCGCGAGTATCTCAAAGAGCACAAG
GCCATGGCGATCGAGATCGAAAACAAGGTTCGCGAAAATCAAGGCATCGTCAGCCGGGCGGCAGAGTTTGCCCCCAGCGC
CGAAGAACGCTCCGAAGATTGA
Similar proteins
Only experimentally validated proteins are listed.