Detailed information NTG0381328

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: FYA88_RS08150
• Genome accession: NZ_CP043128
• Coordinates: 1623160..1624221 (+)
• Length: 353 a.a.
• NCBI ID: WP_005013565.1
• Uniprot ID: A0A158M9U3
• Organism: Bordetella holmesii strain H807
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1602839..1629458	1623160..1624221	within	0

Gene organization within MGE regions

Location: 1602839..1629458

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FYA88_RS08030 (FYA88_08080)	pstB	1602839..1603615 (+)	777	WP_005013538.1	phosphate ABC transporter ATP-binding protein PstB	-
FYA88_RS08040 (FYA88_08090)	-	1604443..1604952 (+)	510	WP_005013539.1	DUF1993 family protein	-
FYA88_RS08045 (FYA88_08095)	-	1605021..1605847 (+)	827	Protein_1541	IS3 family transposase	-
FYA88_RS08050 (FYA88_08100)	istB	1606030..1606800 (-)	771	WP_005013542.1	IS21-like element helper ATPase IstB	-
FYA88_RS08055 (FYA88_08105)	istA	1606797..1607807 (-)	1011	WP_025341421.1	IS21 family transposase	-
FYA88_RS08060 (FYA88_08110)	-	1607866..1608947 (+)	1082	WP_101557920.1	IS3 family transposase	-
FYA88_RS08070 (FYA88_08120)	-	1609115..1610235 (+)	1121	WP_370510763.1	IS3 family transposase	-
FYA88_RS08075 (FYA88_08125)	bla	1610236..1610979 (+)	744	WP_080601033.1	class A beta-lactamase	-
FYA88_RS08080 (FYA88_08130)	-	1610984..1611355 (-)	372	WP_005013549.1	hypothetical protein	-
FYA88_RS08085 (FYA88_08135)	-	1611416..1611661 (+)	246	WP_005013550.1	hypothetical protein	-
FYA88_RS08090 (FYA88_08140)	-	1611768..1613204 (-)	1437	WP_025341423.1	PLP-dependent aminotransferase family protein	-
FYA88_RS08100 (FYA88_08150)	-	1613889..1614224 (+)	336	WP_005013552.1	hypothetical protein	-
FYA88_RS08105 (FYA88_08155)	-	1614483..1614614 (+)	132	WP_005013553.1	entericidin A/B family lipoprotein	-
FYA88_RS08110 (FYA88_08160)	-	1614713..1615141 (+)	429	WP_025341425.1	BPTD_2524 family lipoprotein	-
FYA88_RS08115 (FYA88_08165)	-	1615151..1615525 (+)	375	WP_005013556.1	hypothetical protein	-
FYA88_RS08120 (FYA88_08170)	-	1615616..1616908 (+)	1293	WP_005013558.1	aspartate carbamoyltransferase	-
FYA88_RS08125 (FYA88_08175)	-	1617025..1617924 (-)	900	WP_005013559.1	recombination-associated protein RdgC	-
FYA88_RS08130 (FYA88_08180)	-	1618076..1618294 (+)	219	WP_005013561.1	hypothetical protein	-
FYA88_RS08135 (FYA88_08185)	-	1618768..1620444 (-)	1677	WP_153570637.1	MFS transporter	-
FYA88_RS08140 (FYA88_08190)	-	1620629..1622008 (-)	1380	WP_100225812.1	sensor histidine kinase	-
FYA88_RS08145 (FYA88_08195)	-	1622124..1622819 (-)	696	WP_005013564.1	response regulator transcription factor	-
FYA88_RS08150 (FYA88_08200)	recA	1623160..1624221 (+)	1062	WP_005013565.1	recombinase RecA	Machinery gene
FYA88_RS08155 (FYA88_08205)	recX	1624267..1624818 (+)	552	WP_005013566.1	recombination regulator RecX	-
FYA88_RS08160 (FYA88_08210)	-	1624825..1625745 (-)	921	WP_005013567.1	LysR family transcriptional regulator	-
FYA88_RS08165 (FYA88_08215)	metE	1625885..1628182 (+)	2298	WP_005013568.1	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	-
FYA88_RS08170 (FYA88_08220)	-	1628238..1629458 (-)	1221	WP_005011985.1	ISL3 family transposase	-

Sequence

Protein

• Length: 353 a.a.
• Molecular weight: 37961.36 Da
• Isoelectric Point: 5.3510

>NTDB_id=381328 FYA88_RS08150 WP_005013565.1 1623160..1624221(+) (recA) [Bordetella holmesii strain H807]
MDDKTSKAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPKA
EIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK
GDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVVEKSGAWYSYSGNRIGQGKDNVREYLKEHK
AMAIEIENKVRENQGIVSRAAEFAPSAEERSED

Nucleotide

• Length: 1062 bp

>NTDB_id=381328 FYA88_RS08150 WP_005013565.1 1623160..1624221(+) (recA) [Bordetella holmesii strain H807]
ATGGACGACAAAACCAGCAAGGCCGCATCGGAAAAAGCCAAGGCCCTGGCCGCAGCGCTCTCCCAGATCGAAAAGCAGTT
TGGCAAGGGCTCGATCATGCGCTACGGCGACAATGAGGTCGAGCACGACATCCAGGTCGTTTCCACCGGTTCGCTGGGTC
TCGACATCGCATTGGGCGTGGGTGGTCTGCCGCGGGGCCGTGTCGTAGAAATCTACGGCCCCGAATCCTCGGGCAAGACC
ACGCTGACACTGCAGGTCATCGCCGAAATGCAGAAGATCGGCGGCACTTGTGCCTTCGTCGATGCTGAGCACGCGCTGGA
TGTCCAATACGCCTCCAAGCTGGGTGTCAACCTGGCGGATCTGCTCATCTCCCAACCGGACACCGGCGAGCAAGCGCTCG
AGATCACCGATGCACTGGTGCGCTCCGGTTCGGTGGATCTTATCGTTATCGATTCGGTCGCGGCTCTGGTGCCCAAGGCC
GAAATCGAGGGCGAGATGGGCGACTCCTTGCCGGGTCTGCAGGCGCGCCTGATGAGCCAGGCTCTGCGCAAACTGACCGC
CACTATCAAGCGCACCAATTGTATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAACCCCG
AAACCACCACCGGGGGCAATGCACTGAAGTTCTATGCTTCTGTGCGCCTGGATATCCGTCGCATTGGCTCCATCAAAAAA
GGCGACGAAGTCGTCGGCAACGAAACTCGCGTCAAAGTCGTCAAAAATAAGGTGGCGCCACCGTTCAAGCAGGCCGAGTT
CGACATCATGTATGGTGCCGGCATTTCGCGCGAAGGCGAGATCATCGACCTGGGCGTAGCTGCCAACGTGGTTGAAAAAT
CTGGTGCTTGGTACAGCTATAGCGGCAATCGCATCGGCCAGGGCAAGGACAACGTGCGCGAGTATCTCAAAGAGCACAAG
GCCATGGCGATCGAGATCGAAAACAAGGTTCGCGAAAATCAAGGCATCGTCAGCCGGGCGGCAGAGTTTGCCCCCAGCGC
CGAAGAACGCTCCGAAGATTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (14-276)

3D structure

• AlphaFold DB: A0A158M9U3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Ralstonia pseudosolanacearum GMI1000	81.972	100	0.824
recA	Pseudomonas stutzeri DSM 10701	71.848	96.601	0.694
recA	Acinetobacter baylyi ADP1	68.272	100	0.683
recA	Vibrio cholerae O1 biovar El Tor strain E7946	73.832	90.935	0.671
recA	Vibrio cholerae strain A1552	73.832	90.935	0.671
recA	Neisseria gonorrhoeae MS11	71.951	92.918	0.669
recA	Neisseria gonorrhoeae MS11	71.951	92.918	0.669
recA	Neisseria gonorrhoeae strain FA1090	71.951	92.918	0.669
recA	Acinetobacter baumannii D1279779	73.209	90.935	0.666
recA	Glaesserella parasuis strain SC1401	71.651	90.935	0.652
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	64.671	94.618	0.612
recA	Helicobacter pylori 26695	62.209	97.45	0.606
recA	Helicobacter pylori strain NCTC11637	61.919	97.45	0.603
recA	Latilactobacillus sakei subsp. sakei 23K	62.281	96.884	0.603
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.031	92.351	0.601
recA	Bacillus subtilis subsp. subtilis str. 168	64.526	92.635	0.598
recA	Streptococcus pneumoniae R6	58.944	96.601	0.569
recA	Streptococcus pneumoniae Rx1	58.944	96.601	0.569
recA	Streptococcus pneumoniae D39	58.944	96.601	0.569
recA	Streptococcus pneumoniae TIGR4	58.944	96.601	0.569
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.92	91.501	0.567
recA	Lactococcus lactis subsp. cremoris KW2	58.651	96.601	0.567
recA	Streptococcus mutans UA159	56.215	100	0.564
recA	Streptococcus mitis SK321	58.358	96.601	0.564
recA	Streptococcus mitis NCTC 12261	58.358	96.601	0.564
recA	Streptococcus pyogenes NZ131	59.819	93.768	0.561