Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACAN_RS13345 Genome accession   NZ_CP042812
Coordinates   2708894..2709925 (+) Length   343 a.a.
NCBI ID   WP_079577551.1    Uniprot ID   -
Organism   Malaciobacter canalis strain LMG 29148     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2703894..2714925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAN_RS13320 (ACAN_2668) pseG 2704324..2705238 (-) 915 WP_099334550.1 UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase -
  ACAN_RS13325 (ACAN_2669) - 2705240..2705968 (-) 729 WP_099334598.1 cytidylyltransferase domain-containing protein -
  ACAN_RS13330 (ACAN_2670) - 2705965..2706576 (-) 612 WP_099334549.1 pseudaminic acid biosynthesis-associated methylase -
  ACAN_RS13335 (ACAN_2671) pseC 2706579..2707712 (-) 1134 WP_099334548.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase -
  ACAN_RS13340 (ACAN_2672) pseB 2707712..2708704 (-) 993 WP_099334547.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  ACAN_RS13345 (ACAN_2673) recA 2708894..2709925 (+) 1032 WP_079577551.1 recombinase RecA Machinery gene
  ACAN_RS13350 (ACAN_2674) eno 2710074..2711348 (+) 1275 WP_099309857.1 phosphopyruvate hydratase -
  ACAN_RS13355 (ACAN_2675) - 2711354..2711596 (+) 243 WP_079577553.1 septum formation initiator -
  ACAN_RS13360 (ACAN_2676) - 2711593..2712300 (+) 708 WP_079577554.1 AMIN domain-containing protein -
  ACAN_RS13365 (ACAN_2677) - 2712311..2713474 (-) 1164 WP_099334546.1 cation:proton antiporter -
  ACAN_RS13370 (ACAN_2678) - 2713484..2714335 (-) 852 WP_099334545.1 biotin synthase -
  ACAN_RS13375 (ACAN_2679) - 2714325..2714837 (-) 513 WP_099334544.1 YfcE family phosphodiesterase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37070.64 Da        Isoelectric Point: 4.9514

>NTDB_id=378718 ACAN_RS13345 WP_079577551.1 2708894..2709925(+) (recA) [Malaciobacter canalis strain LMG 29148]
MDDNQKKSLDLAIKQIDKAFGKGTLIRLGDKEVVPTEAISTGSLGLDLALGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
ECQKAGGVCAFIDAEHALDTMYARNLGVDIDNLLVSQPDYGEQALEILETVVRSGAVNLVVIDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKITSIMNKMGTTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQAEESIGN
RAKVKVVKNKVAPPFKIAEFDIMFGEGISKMGELIDYGVKLDIVDKAGAWFSYGDSKIGQGKENSKQFLKDNPEIAAEIE
AKILQAMGLDSNMHELETTEEEK

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=378718 ACAN_RS13345 WP_079577551.1 2708894..2709925(+) (recA) [Malaciobacter canalis strain LMG 29148]
ATGGATGATAATCAAAAAAAGTCACTTGATTTAGCAATTAAGCAAATTGATAAAGCTTTTGGAAAAGGTACTTTAATTAG
ACTTGGAGATAAAGAAGTTGTACCAACAGAAGCCATTTCAACTGGTTCACTTGGACTTGATTTAGCATTAGGTGTAGGAG
GACTTCCAAAAGGTAGAGTAATTGAAATCTATGGACCTGAAAGTTCAGGTAAAACAACTCTAACTTTACATGCAATTGCA
GAGTGCCAAAAAGCAGGTGGAGTTTGTGCCTTTATTGATGCAGAACATGCACTAGATACAATGTATGCAAGAAATCTTGG
AGTTGATATAGATAATTTACTTGTTTCACAACCTGATTATGGAGAACAAGCTTTAGAGATTTTAGAAACAGTTGTAAGAA
GTGGTGCTGTTAATCTAGTAGTAATTGACTCAGTAGCAGCTCTTACTCCAAAAGTAGAGATTGATGGAGATATGGATGAC
CAGCAAGTAGGTGTTCAAGCAAGACTTATGAGTAAAGCTTTAAGAAAAATTACTAGTATAATGAACAAAATGGGAACAAC
AGTAATTTTTATTAACCAAATTAGAATGAAAATTGGAATGACAGGATATGGAAGTCCTGAAACTACAACTGGTGGAAATG
CTCTTAAATTCTACTCTTCTGTAAGATTAGATATTAGAAGAATTGCAACACTTAAACAAGCAGAAGAGAGTATAGGAAAT
AGAGCTAAAGTTAAAGTTGTAAAAAATAAAGTTGCACCTCCATTTAAAATAGCTGAATTTGATATTATGTTTGGAGAGGG
TATTTCTAAAATGGGTGAGCTTATTGACTATGGTGTTAAACTTGATATTGTTGATAAAGCAGGAGCTTGGTTTAGTTATG
GGGATTCAAAAATTGGTCAAGGAAAAGAGAATTCAAAACAATTCTTAAAAGATAACCCAGAAATTGCAGCAGAAATTGAA
GCAAAAATTCTACAAGCTATGGGATTAGATAGCAATATGCATGAGCTTGAAACTACAGAAGAAGAAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

74.636

100

0.746
  recA Helicobacter pylori strain NCTC11637

74.405

97.959

0.729
  recA Helicobacter pylori 26695

74.107

97.959

0.726
  recA Acinetobacter baylyi ADP1

64.535

100

0.647
  recA Neisseria gonorrhoeae MS11

63.848

100

0.638
  recA Neisseria gonorrhoeae MS11

63.848

100

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.848

100

0.638
  recA Acinetobacter baumannii D1279779

65.749

95.335

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.253

96.793

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

62.048

96.793

0.601
  recA Pseudomonas stutzeri DSM 10701

62.539

94.169

0.589
  recA Glaesserella parasuis strain SC1401

61.212

96.21

0.589
  recA Ralstonia pseudosolanacearum GMI1000

64.013

91.545

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.997

98.834

0.583
  recA Vibrio cholerae strain A1552

58.997

98.834

0.583
  recA Streptococcus mutans UA159

57.061

100

0.577
  recA Streptococcus mitis SK321

57.31

99.708

0.571
  recA Streptococcus mitis NCTC 12261

58.967

95.918

0.566
  recA Streptococcus pyogenes NZ131

58.788

96.21

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

56.725

99.708

0.566
  recA Streptococcus pneumoniae Rx1

58.663

95.918

0.563
  recA Streptococcus pneumoniae D39

58.663

95.918

0.563
  recA Streptococcus pneumoniae R6

58.663

95.918

0.563
  recA Streptococcus pneumoniae TIGR4

58.663

95.918

0.563
  recA Lactococcus lactis subsp. cremoris KW2

58.41

95.335

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.099

94.461

0.539

Multiple sequence alignment