Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FRD01_RS07375 Genome accession   NZ_CP042467
Coordinates   1749417..1750454 (-) Length   345 a.a.
NCBI ID   WP_146958749.1    Uniprot ID   A0A5B8XN49
Organism   Microvenator marinus strain V1718     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1744417..1755454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD01_RS07360 (FRD01_07360) - 1744713..1745705 (-) 993 WP_146958746.1 hypothetical protein -
  FRD01_RS07365 (FRD01_07365) - 1745839..1747329 (-) 1491 WP_146958747.1 hypothetical protein -
  FRD01_RS07370 (FRD01_07370) - 1747339..1749249 (-) 1911 WP_146958748.1 hypothetical protein -
  FRD01_RS07375 (FRD01_07375) recA 1749417..1750454 (-) 1038 WP_146958749.1 recombinase RecA Machinery gene
  FRD01_RS07380 (FRD01_07380) - 1750613..1751341 (-) 729 WP_146958750.1 SCE4755 family polysaccharide monooxygenase-like protein -
  FRD01_RS07385 (FRD01_07385) - 1751373..1753307 (-) 1935 WP_146958751.1 S41 family peptidase -
  FRD01_RS07390 (FRD01_07390) - 1753474..1753968 (+) 495 WP_146958752.1 DUF4442 domain-containing protein -
  FRD01_RS07395 (FRD01_07395) - 1753968..1755023 (+) 1056 WP_146958753.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37376.73 Da        Isoelectric Point: 5.9977

>NTDB_id=378029 FRD01_RS07375 WP_146958749.1 1749417..1750454(-) (recA) [Microvenator marinus strain V1718]
MAIDKDKQKALDLTVHAIEKQFGKGTIMKLGNDDPLVNVKDAIPTGSISLDIALGIGGFARGRIVEVFGPESSGKTTLAL
HALANAQRAGGVAAFIDAEHALDIKYAKSLGVNIEELLVSQPDTGEQALEIVDMLVRSNAVDVLVVDSVAALTPRAEIEG
DMGDSHVGLQARLMSQALRKLTGTINKSKTCVIFINQIRMKIGVMFGSPETTTGGNALKFYCSQRLDIRRIGAIKDGEEL
SGNRTRVKVVKNKLAAPFRQAEFDIMYGEGISWEGDVLDLGSEINVVDKAGSWYSYNDTRLGQGRENAKQYLREHPEMTA
DIVRQIREHYGLSAPAPELAVVESK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=378029 FRD01_RS07375 WP_146958749.1 1749417..1750454(-) (recA) [Microvenator marinus strain V1718]
ATGGCAATCGATAAAGATAAACAAAAAGCTCTCGACCTCACTGTTCATGCGATTGAAAAGCAGTTCGGTAAGGGAACCAT
CATGAAGTTGGGGAATGATGATCCCTTGGTCAACGTCAAGGACGCGATTCCTACCGGGTCTATCTCTTTGGACATCGCAC
TCGGGATCGGTGGGTTTGCTCGCGGGAGAATTGTGGAGGTCTTCGGACCAGAATCCTCTGGTAAGACCACTCTTGCGCTT
CACGCCCTGGCAAATGCGCAGCGTGCCGGCGGAGTCGCAGCATTCATCGATGCCGAGCACGCGCTCGATATCAAGTACGC
CAAATCGCTCGGTGTTAATATCGAGGAACTTTTGGTCAGCCAGCCCGATACAGGGGAGCAGGCCCTTGAAATCGTGGATA
TGTTGGTTCGCTCAAACGCGGTTGACGTACTCGTGGTGGACTCTGTTGCGGCATTGACCCCACGCGCAGAAATTGAAGGT
GATATGGGGGATTCCCACGTGGGCCTTCAGGCACGTTTGATGAGTCAGGCTCTTCGAAAGTTGACCGGTACGATCAACAA
ATCGAAGACATGTGTGATCTTCATTAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGAAGCCCGGAGACCACAACGG
GTGGTAACGCCCTGAAGTTCTACTGCTCGCAACGCCTTGATATCCGGCGTATTGGTGCGATTAAGGACGGCGAAGAGCTC
AGCGGAAACCGTACCCGTGTCAAAGTCGTGAAGAACAAGCTGGCAGCTCCGTTTAGGCAGGCCGAGTTCGATATTATGTA
CGGCGAGGGGATCAGCTGGGAAGGAGACGTTTTGGACCTTGGCTCCGAGATCAACGTCGTGGACAAAGCGGGCTCCTGGT
ACAGCTACAACGACACTCGCCTCGGTCAGGGCAGGGAAAATGCCAAGCAGTACTTGCGCGAGCACCCAGAAATGACGGCC
GATATCGTACGTCAAATTCGGGAACACTACGGCTTGAGCGCTCCAGCACCTGAACTTGCCGTAGTTGAATCAAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8XN49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.207

95.072

0.658
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.871

94.493

0.632
  recA Vibrio cholerae strain A1552

66.871

94.493

0.632
  recA Neisseria gonorrhoeae MS11

66.361

94.783

0.629
  recA Neisseria gonorrhoeae MS11

66.361

94.783

0.629
  recA Neisseria gonorrhoeae strain FA1090

66.361

94.783

0.629
  recA Pseudomonas stutzeri DSM 10701

65.549

95.072

0.623
  recA Helicobacter pylori strain NCTC11637

64.458

96.232

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.35

95.942

0.617
  recA Helicobacter pylori 26695

63.855

96.232

0.614
  recA Acinetobacter baylyi ADP1

64.526

94.783

0.612
  recA Latilactobacillus sakei subsp. sakei 23K

60.519

100

0.609
  recA Ralstonia pseudosolanacearum GMI1000

66.139

91.594

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

95.072

0.6
  recA Acinetobacter baumannii D1279779

62.997

94.783

0.597
  recA Glaesserella parasuis strain SC1401

63.551

93.043

0.591
  recA Streptococcus pneumoniae TIGR4

60.542

96.232

0.583
  recA Streptococcus pneumoniae D39

60.542

96.232

0.583
  recA Streptococcus pneumoniae Rx1

60.542

96.232

0.583
  recA Streptococcus pneumoniae R6

60.542

96.232

0.583
  recA Streptococcus mitis SK321

60.241

96.232

0.58
  recA Streptococcus mitis NCTC 12261

59.94

96.232

0.577
  recA Streptococcus mutans UA159

59.639

96.232

0.574
  recA Streptococcus pyogenes NZ131

59.517

95.942

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

92.754

0.565
  recA Lactococcus lactis subsp. cremoris KW2

57.229

96.232

0.551

Multiple sequence alignment