Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FO488_RS15675 Genome accession   NZ_CP042466
Coordinates   3314588..3315589 (-) Length   333 a.a.
NCBI ID   WP_149211416.1    Uniprot ID   A0A5C1MFA8
Organism   Geobacter sp. FeAm09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3309588..3320589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO488_RS15660 (FO488_15660) alaS 3309973..3312609 (-) 2637 WP_149211413.1 alanine--tRNA ligase -
  FO488_RS15665 (FO488_15665) - 3312649..3313131 (-) 483 WP_149211414.1 regulatory protein RecX -
  FO488_RS15670 (FO488_15670) - 3313118..3314272 (-) 1155 WP_149211415.1 type IV pilus twitching motility protein PilT -
  FO488_RS15675 (FO488_15675) recA 3314588..3315589 (-) 1002 WP_149211416.1 recombinase RecA Machinery gene
  FO488_RS15680 (FO488_15680) - 3315850..3317100 (-) 1251 WP_149211417.1 competence/damage-inducible protein A -
  FO488_RS15685 (FO488_15685) larC 3317097..3318284 (-) 1188 WP_149211418.1 nickel pincer cofactor biosynthesis protein LarC -
  FO488_RS15690 (FO488_15690) larB 3318286..3319035 (-) 750 WP_149211419.1 nickel pincer cofactor biosynthesis protein LarB -
  FO488_RS20710 (FO488_15695) - 3319254..3320143 (+) 890 Protein_3150 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35638.14 Da        Isoelectric Point: 6.1651

>NTDB_id=378023 FO488_RS15675 WP_149211416.1 3314588..3315589(-) (recA) [Geobacter sp. FeAm09]
MQEKNKAIELALSQIEKQFGKGAIMRLGNDEVLPGVEAISTGAISLDMALGVGGVPRGRVVEVYGPESSGKTTLALHIVA
EAQKTGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQALEIAETLVRSGAIDVLVIDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLTGIISKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIATLKQGDQVIGSR
TRVKVVKNKVAPPFKEVEFDILYGEGISRTGDVLDLAVDKGIIEKSGAWFSYGKERIAQGRENSRTWLTEHPETLAEIEG
KLMALVKGPAPAE

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=378023 FO488_RS15675 WP_149211416.1 3314588..3315589(-) (recA) [Geobacter sp. FeAm09]
ATGCAGGAAAAAAACAAGGCGATTGAACTGGCCCTGAGCCAGATCGAGAAACAGTTCGGCAAGGGCGCCATCATGCGTTT
GGGCAATGACGAGGTGTTGCCGGGCGTGGAGGCGATCTCGACCGGCGCCATATCCCTGGACATGGCCCTGGGAGTCGGCG
GGGTCCCCCGCGGCCGGGTGGTGGAGGTCTACGGTCCGGAATCCTCGGGCAAGACCACCCTGGCGCTGCATATCGTGGCG
GAAGCCCAGAAGACCGGCGGCATCGCGGCATTCGTGGATGCGGAGCACGCCCTGGACATCGGCTATGCCCGCAAGCTGGG
GGTCAAGACCGACGACCTGCTGGTATCCCAGCCCGACACCGGCGAGCAGGCGTTGGAAATCGCCGAAACCCTGGTGCGCA
GCGGCGCCATCGACGTGCTGGTGATCGACTCGGTGGCGGCCCTGGTCCCCAAGGCCGAGATCGAGGGGGAGATGGGGGAC
TCGCACGTAGGGCTCCAGGCGCGCCTCATGTCCCAGGCCCTGCGCAAGCTGACCGGCATCATCAGCAAATCCAACTGCTG
CGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAACCCCGAAACGACCACCGGCGGCAACGCAC
TCAAATTCTACGCCTCGGTGCGCATGGATATCCGCAAGATCGCCACCCTCAAGCAGGGGGACCAGGTGATCGGCTCCCGC
ACCCGCGTCAAGGTGGTCAAGAACAAGGTTGCCCCACCCTTCAAGGAGGTCGAGTTCGACATCCTCTACGGCGAAGGCAT
CTCCCGAACCGGCGACGTACTGGACTTGGCGGTGGACAAGGGGATCATCGAAAAGAGCGGTGCCTGGTTCTCCTACGGCA
AGGAGCGGATCGCCCAGGGCCGGGAGAATTCCCGCACCTGGCTGACCGAACATCCCGAGACCCTGGCCGAGATCGAAGGG
AAGCTGATGGCGCTGGTCAAGGGACCGGCCCCCGCCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C1MFA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.753

92.492

0.664
  recA Neisseria gonorrhoeae MS11

67.802

96.997

0.658
  recA Neisseria gonorrhoeae MS11

67.802

96.997

0.658
  recA Neisseria gonorrhoeae strain FA1090

67.802

96.997

0.658
  recA Pseudomonas stutzeri DSM 10701

67.183

96.997

0.652
  recA Glaesserella parasuis strain SC1401

67.29

96.396

0.649
  recA Acinetobacter baylyi ADP1

68.038

94.895

0.646
  recA Acinetobacter baumannii D1279779

66.667

95.495

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.772

94.895

0.634
  recA Helicobacter pylori strain NCTC11637

65.217

96.697

0.631
  recA Helicobacter pylori 26695

64.907

96.697

0.628
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.914

98.198

0.628
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.415

98.498

0.625
  recA Vibrio cholerae strain A1552

63.415

98.498

0.625
  recA Latilactobacillus sakei subsp. sakei 23K

64.286

96.697

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

96.697

0.61
  recA Streptococcus mitis SK321

59.763

100

0.607
  recA Streptococcus mitis NCTC 12261

59.467

100

0.604
  recA Streptococcus pneumoniae D39

62.305

96.396

0.601
  recA Streptococcus pneumoniae TIGR4

62.305

96.396

0.601
  recA Streptococcus pneumoniae R6

62.305

96.396

0.601
  recA Streptococcus pneumoniae Rx1

62.305

96.396

0.601
  recA Streptococcus pyogenes NZ131

61.42

97.297

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.231

97.598

0.598
  recA Streptococcus mutans UA159

61.111

97.297

0.595
  recA Lactococcus lactis subsp. cremoris KW2

60.736

97.898

0.595

Multiple sequence alignment