Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FSB75_RS14375 Genome accession   NZ_CP042433
Coordinates   3424959..3425966 (-) Length   335 a.a.
NCBI ID   WP_146788906.1    Uniprot ID   A0A5B8UKS4
Organism   Flavisolibacter ginsenosidimutans strain Gsoil 636     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3419959..3430966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSB75_RS14355 (FSB75_14355) - 3420874..3421131 (+) 258 WP_146788898.1 hypothetical protein -
  FSB75_RS14360 (FSB75_14360) - 3421211..3421585 (+) 375 WP_172623155.1 PleD family two-component system response regulator -
  FSB75_RS14365 (FSB75_14365) - 3422275..3422568 (-) 294 WP_146788902.1 hypothetical protein -
  FSB75_RS14370 (FSB75_14370) uvrB 3422735..3424765 (-) 2031 WP_146788904.1 excinuclease ABC subunit UvrB -
  FSB75_RS14375 (FSB75_14375) recA 3424959..3425966 (-) 1008 WP_146788906.1 recombinase RecA Machinery gene
  FSB75_RS14380 (FSB75_14380) - 3426246..3426710 (+) 465 WP_146788908.1 DUF4920 domain-containing protein -
  FSB75_RS14385 (FSB75_14385) - 3426898..3428199 (+) 1302 WP_146788910.1 hypothetical protein -
  FSB75_RS14390 (FSB75_14390) - 3428351..3429064 (-) 714 WP_146788912.1 LytTR family DNA-binding domain-containing protein -
  FSB75_RS14395 (FSB75_14395) - 3429061..3430176 (-) 1116 WP_146788914.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36143.66 Da        Isoelectric Point: 5.5774

>NTDB_id=377872 FSB75_RS14375 WP_146788906.1 3424959..3425966(-) (recA) [Flavisolibacter ginsenosidimutans strain Gsoil 636]
MSNAEKLKALKLTMDKIDKDFGKGSVMMMNERGEQTQEVVSTGSIGLDSALGIGGLPRGRVVEIYGPESSGKTTIATHVI
AEAQKKGGMCAIIDAEHAFDSSYAQKLGVDIDNLLISQPDYGEQALEIADRLILSGALDVVVIDSVAALVPKGELEGEMG
DSKMGLQARLMSQALRKLTATISKTNTICIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRMTQIKDGEEAIGN
RVKVKVVKNKVAPPFRVAEFDLVFGEGISKIGEILDMGVDMGIVQKSGSWFSYDSNKLGQGREGVKQLLKDNPELANELE
AKIRAKITEMQTASA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=377872 FSB75_RS14375 WP_146788906.1 3424959..3425966(-) (recA) [Flavisolibacter ginsenosidimutans strain Gsoil 636]
ATGTCAAACGCTGAAAAATTAAAAGCACTGAAGCTTACCATGGACAAAATAGACAAGGACTTTGGCAAGGGCAGTGTGAT
GATGATGAACGAACGCGGCGAACAAACCCAGGAAGTGGTTTCTACCGGCTCTATCGGGCTGGATTCGGCCTTGGGAATTG
GCGGTTTGCCCCGCGGCCGCGTGGTAGAGATTTACGGCCCGGAAAGCTCCGGTAAAACCACCATTGCGACCCACGTGATT
GCCGAAGCGCAAAAGAAAGGCGGCATGTGTGCCATCATTGATGCGGAACACGCCTTTGATAGCTCGTATGCACAAAAGCT
CGGCGTTGACATTGACAACTTATTGATCTCTCAACCCGATTACGGAGAACAAGCCCTTGAGATTGCCGACCGTTTGATTC
TTTCCGGTGCTTTAGACGTTGTGGTAATTGACTCCGTAGCCGCACTGGTTCCGAAAGGCGAATTAGAAGGCGAAATGGGC
GACAGCAAAATGGGTTTACAGGCACGTTTGATGTCGCAGGCTTTGCGTAAGCTTACTGCCACCATTTCCAAAACAAACAC
CATCTGTATTTTCATCAACCAGCTTCGCGAAAAAATCGGCGTGATGTTCGGTAACCCCGAAACCACAACCGGCGGTAACG
CGTTGAAGTTTTACGCTTCTGTACGTTTGGATATTCGCCGCATGACGCAGATTAAAGACGGCGAAGAAGCCATCGGTAAC
CGCGTAAAAGTAAAAGTGGTGAAGAACAAAGTGGCGCCGCCGTTTCGCGTAGCCGAATTTGACCTTGTGTTTGGCGAAGG
CATTTCCAAGATTGGCGAGATCCTGGACATGGGCGTGGACATGGGCATTGTGCAAAAAAGCGGTAGCTGGTTTAGCTACG
ACAGCAACAAGCTCGGCCAAGGCCGCGAAGGCGTGAAGCAACTCCTAAAGGATAATCCCGAACTGGCGAACGAACTCGAA
GCCAAAATCAGGGCAAAGATTACCGAGATGCAAACGGCATCAGCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8UKS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.674

98.806

0.669
  recA Ralstonia pseudosolanacearum GMI1000

66.881

92.836

0.621
  recA Neisseria gonorrhoeae MS11

64.596

96.119

0.621
  recA Neisseria gonorrhoeae MS11

64.596

96.119

0.621
  recA Neisseria gonorrhoeae strain FA1090

64.596

96.119

0.621
  recA Glaesserella parasuis strain SC1401

64.375

95.522

0.615
  recA Acinetobacter baylyi ADP1

63.665

96.119

0.612
  recA Helicobacter pylori strain NCTC11637

62.27

97.313

0.606
  recA Helicobacter pylori 26695

62.27

97.313

0.606
  recA Acinetobacter baumannii D1279779

61.212

98.507

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

95.821

0.603
  recA Streptococcus pyogenes NZ131

61.468

97.612

0.6
  recA Lactococcus lactis subsp. cremoris KW2

61.35

97.313

0.597
  recA Streptococcus mutans UA159

61.35

97.313

0.597
  recA Pseudomonas stutzeri DSM 10701

62.112

96.119

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.5

95.522

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

97.015

0.597
  recA Streptococcus pneumoniae D39

60.671

97.91

0.594
  recA Streptococcus mitis NCTC 12261

60.671

97.91

0.594
  recA Streptococcus pneumoniae Rx1

60.671

97.91

0.594
  recA Streptococcus pneumoniae R6

60.671

97.91

0.594
  recA Streptococcus pneumoniae TIGR4

60.671

97.91

0.594
  recA Streptococcus mitis SK321

60.671

97.91

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.815

95.224

0.579
  recA Vibrio cholerae strain A1552

60.815

95.224

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.025

96.716

0.561

Multiple sequence alignment