Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FGL80_RS00705 Genome accession   NZ_CP042420
Coordinates   142555..143700 (-) Length   381 a.a.
NCBI ID   WP_147001670.1    Uniprot ID   -
Organism   Leuconostoc lactis strain CBA3622     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 134652..143700 142555..143700 within 0


Gene organization within MGE regions


Location: 134652..143700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL80_RS00665 (FGL80_00665) pstB 134652..135422 (-) 771 WP_055307560.1 phosphate ABC transporter ATP-binding protein PstB -
  FGL80_RS00670 (FGL80_00670) pstB 135419..136258 (-) 840 WP_010001785.1 phosphate ABC transporter ATP-binding protein PstB -
  FGL80_RS00675 (FGL80_00675) pstA 136350..137234 (-) 885 WP_055307559.1 phosphate ABC transporter permease PstA -
  FGL80_RS00680 (FGL80_00680) pstC 137234..138157 (-) 924 WP_029509636.1 phosphate ABC transporter permease subunit PstC -
  FGL80_RS00685 (FGL80_00685) - 138241..139134 (-) 894 WP_147001667.1 phosphate ABC transporter substrate-binding protein PstS family protein -
  FGL80_RS00690 (FGL80_00690) - 139240..140595 (-) 1356 WP_147001668.1 ATP-binding protein -
  FGL80_RS00695 (FGL80_00695) - 140664..141572 (-) 909 WP_147001669.1 phosphate ABC transporter substrate-binding protein -
  FGL80_RS00700 (FGL80_00700) - 141751..142440 (-) 690 WP_010001777.1 response regulator transcription factor -
  FGL80_RS00705 (FGL80_00705) recA 142555..143700 (-) 1146 WP_147001670.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 40874.44 Da        Isoelectric Point: 4.6287

>NTDB_id=377807 FGL80_RS00705 WP_147001670.1 142555..143700(-) (recA) [Leuconostoc lactis strain CBA3622]
MVTKKTTKKDDKDSQASGRKAALDEALKRIEKNFGKGSIMLLGDNALTQVETYPSGSVKLDVALGVGGYPKGRIIEIYGP
ESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLNRTGTVAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRR
STQIKDGTDVTGNLTKVKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGAEQEIIRKAGAFYYYGDVKVGQGREKAKE
FLDAPENAAMRQEIYAKVRNAFGIGDGELLVEETDDEVIEAPETLTLVADEDDDLTDEPIV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=377807 FGL80_RS00705 WP_147001670.1 142555..143700(-) (recA) [Leuconostoc lactis strain CBA3622]
ATGGTCACAAAAAAGACGACTAAAAAAGACGATAAAGACAGTCAAGCAAGCGGCCGTAAGGCGGCACTTGATGAGGCTTT
AAAGCGTATCGAAAAAAATTTCGGTAAGGGATCAATCATGCTGTTAGGGGATAATGCGCTGACACAAGTTGAGACTTATC
CTTCAGGATCAGTTAAGCTAGATGTTGCTTTAGGCGTTGGTGGCTATCCTAAGGGACGTATTATTGAAATTTATGGACCA
GAATCTTCTGGTAAAACAACGTTGGCCTTACACGCTGTTGCCGAAGTGCAAAAAGCTGGTGGCACAGCTGCCTATATTGA
TGCCGAAAATGCCTTGGATGTGAAATACGCTGAAGCTTTGGGTGTTAAAAAAGATGAATTGCTTTTGTCACAACCAGATA
CTGGGGAACAAGGGTTAGAAATTGCTGATGCTTTGGTACAATCTGGGGCAGTGGATATCATCGTTGTGGATTCTGTGGCA
GCGTTAGTACCACGTGCAGAAATCGAAGGGGAAATGGGCGACTCACACGTTGGCTTGCAAGCCCGTTTGATGAGCCAAGC
TTTGCGTAAACTGGCGGGTACATTGAACCGTACTGGTACAGTTGCGATTTTTATCAACCAAATTCGTGAAAAGATCGGTG
TCATGTTTGGTAACCCAGAAACGACGCCGGGTGGACGTGCGTTGAAATTCTATTCAACGATCCGTTTGGAAGTTCGTCGT
TCAACCCAAATTAAAGATGGCACAGATGTGACCGGAAACTTAACCAAAGTCAAAGTGGTTAAGAACAAGGTGGCGCCACC
ATTTAAGGTTGCTGAAGTTGATATCATGTACGGAAAGGGCATTTCACAAACTGGTGAAATTTTGGATCTCGGTGCGGAAC
AAGAAATTATCCGCAAAGCCGGTGCCTTTTACTATTACGGTGATGTCAAAGTTGGCCAAGGTCGTGAAAAAGCGAAAGAA
TTCTTGGATGCACCAGAAAATGCTGCGATGCGTCAAGAAATCTATGCTAAAGTCCGTAACGCCTTTGGCATTGGTGATGG
CGAGTTGTTAGTAGAAGAGACTGATGATGAGGTAATTGAAGCCCCAGAAACATTGACATTGGTCGCTGATGAAGATGATG
ATTTAACGGACGAACCAATTGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

74.695

86.089

0.643
  recA Streptococcus mitis SK321

66.205

94.751

0.627
  recA Streptococcus mitis NCTC 12261

65.46

94.226

0.617
  recA Streptococcus pneumoniae R6

63.562

95.801

0.609
  recA Streptococcus pneumoniae Rx1

63.562

95.801

0.609
  recA Streptococcus pneumoniae D39

63.562

95.801

0.609
  recA Streptococcus pneumoniae TIGR4

63.562

95.801

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

70.427

86.089

0.606
  recA Lactococcus lactis subsp. cremoris KW2

64.672

92.126

0.596
  recA Streptococcus pyogenes NZ131

65.029

90.814

0.591
  recA Streptococcus mutans UA159

64.928

90.551

0.588
  recA Ralstonia pseudosolanacearum GMI1000

65.714

82.677

0.543
  recA Acinetobacter baylyi ADP1

58.523

92.388

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.249

90.814

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.475

90.026

0.535
  recA Neisseria gonorrhoeae MS11

60.059

88.714

0.533
  recA Neisseria gonorrhoeae MS11

60.059

88.714

0.533
  recA Neisseria gonorrhoeae strain FA1090

60.059

88.714

0.533
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.534

92.388

0.522
  recA Vibrio cholerae strain A1552

56.534

92.388

0.522
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.245

85.827

0.517
  recA Acinetobacter baumannii D1279779

61.371

84.252

0.517
  recA Glaesserella parasuis strain SC1401

57.31

89.764

0.514
  recA Pseudomonas stutzeri DSM 10701

60.125

84.252

0.507
  recA Helicobacter pylori 26695

57.362

85.564

0.491
  recA Helicobacter pylori strain NCTC11637

57.362

85.564

0.491

Multiple sequence alignment