Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FGL72_RS01600 Genome accession   NZ_CP042410
Coordinates   329345..330490 (+) Length   381 a.a.
NCBI ID   WP_146992389.1    Uniprot ID   -
Organism   Leuconostoc citreum strain CBA3621     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 324345..335490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL72_RS01580 (FGL72_01580) yfmF 325190..326467 (+) 1278 WP_146992385.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  FGL72_RS01585 (FGL72_01585) yfmH 326464..327735 (+) 1272 WP_146992387.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  FGL72_RS01590 (FGL72_01590) - 327750..328622 (+) 873 WP_004904929.1 helix-turn-helix domain-containing protein -
  FGL72_RS01595 (FGL72_01595) pgsA 328633..329214 (+) 582 WP_012305368.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FGL72_RS01600 (FGL72_01600) recA 329345..330490 (+) 1146 WP_146992389.1 recombinase RecA Machinery gene
  FGL72_RS01605 (FGL72_01605) - 330602..331291 (+) 690 WP_048801499.1 response regulator transcription factor -
  FGL72_RS01610 (FGL72_01610) - 331475..332386 (+) 912 WP_146992392.1 phosphate ABC transporter substrate-binding protein -
  FGL72_RS01615 (FGL72_01615) - 332500..333813 (+) 1314 WP_099045062.1 sensor histidine kinase -
  FGL72_RS01620 (FGL72_01620) - 333911..334792 (+) 882 WP_012305365.1 phosphate ABC transporter substrate-binding protein PstS family protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 40958.39 Da        Isoelectric Point: 4.7188

>NTDB_id=377742 FGL72_RS01600 WP_146992389.1 329345..330490(+) (recA) [Leuconostoc citreum strain CBA3621]
MVTKKTTKKDDKDSQAKGRKAALDEALKKIEKNFGKGSVMVLGDNALTQIETYPSGSVKLDVALGVGGYPKGRIIEIYGP
ESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRR
STQIKDGTDVTGNLTKVKVVKNKVAPPFKVAEIDIMYGKGVSQTGEILDLGAEQEIIRKAGAFYYYDDVKIGQGREKAKE
FLDDPENADMRQTIYEKVRNAFGIGDGETAESDETTADKQKGAETIELVSDTDDLTDEPIV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=377742 FGL72_RS01600 WP_146992389.1 329345..330490(+) (recA) [Leuconostoc citreum strain CBA3621]
ATGGTCACAAAAAAGACGACTAAAAAAGATGATAAAGATAGCCAAGCTAAAGGCCGAAAAGCCGCTTTAGATGAAGCCTT
AAAAAAAATTGAGAAAAATTTTGGTAAGGGTTCAGTCATGGTTTTAGGTGACAATGCTTTGACGCAAATTGAGACTTATC
CTTCTGGGTCGGTTAAGCTAGATGTTGCGTTAGGTGTTGGTGGTTATCCCAAAGGCCGAATTATTGAAATATATGGACCA
GAATCCTCTGGAAAAACAACTTTAGCTTTACATGCGGTGGCTGAAGTGCAAAAGGCTGGTGGTACAGCAGCTTATATCGA
TGCGGAAAACGCTTTAGATGTAAAGTACGCTGAGGCATTGGGCGTACAAAAAGATGAATTGCTGCTATCACAACCAGATA
CTGGCGAACAAGGCTTAGAAATTGCTGATGCGCTAGTACAATCAGGTGCGGTCGATATTATTGTTGTTGATTCAGTCGCA
GCCCTTGTACCTCGAGCTGAAATTGAAGGTGAAATGGGTGATTCGCATGTTGGTTTGCAAGCACGATTAATGAGTCAAGC
GCTTCGTAAATTAGCTGGGACTTTAAATCGCACAGGAACCATTGCTATTTTTATTAACCAAATTCGTGAAAAAATTGGTG
TGATGTTTGGTAATCCTGAGACAACACCTGGTGGACGCGCGCTGAAGTTCTATTCAACAATTAGACTTGAAGTTCGTCGT
TCAACTCAAATTAAAGATGGTACGGATGTTACAGGTAACCTCACTAAGGTGAAGGTTGTAAAGAATAAAGTTGCGCCACC
ATTTAAAGTGGCAGAAATTGACATCATGTATGGCAAAGGTGTTTCTCAAACTGGTGAAATTTTAGATTTAGGTGCAGAAC
AAGAAATTATTCGCAAAGCTGGCGCTTTTTACTACTATGACGATGTGAAAATTGGTCAAGGCCGTGAAAAGGCAAAAGAA
TTTTTGGATGATCCAGAAAATGCCGATATGCGACAAACAATCTATGAAAAAGTTCGCAATGCTTTTGGTATAGGTGATGG
TGAAACAGCCGAATCCGATGAGACGACTGCAGACAAGCAAAAAGGCGCTGAGACGATAGAACTTGTTAGTGATACAGATG
ACTTGACAGATGAGCCAATTGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

72.886

90.026

0.656
  recA Streptococcus mitis NCTC 12261

62.565

100

0.627
  recA Bacillus subtilis subsp. subtilis str. 168

70.859

85.564

0.606
  recA Streptococcus mitis SK321

65.625

92.388

0.606
  recA Streptococcus pneumoniae D39

62.842

96.063

0.604
  recA Streptococcus pneumoniae Rx1

62.842

96.063

0.604
  recA Streptococcus pneumoniae R6

62.842

96.063

0.604
  recA Streptococcus pneumoniae TIGR4

62.842

96.063

0.604
  recA Lactococcus lactis subsp. cremoris KW2

64.103

92.126

0.591
  recA Streptococcus pyogenes NZ131

64.74

90.814

0.588
  recA Streptococcus mutans UA159

63.689

91.076

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.87

90.551

0.551
  recA Ralstonia pseudosolanacearum GMI1000

65.079

82.677

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.671

90.814

0.533
  recA Acinetobacter baylyi ADP1

60.059

88.714

0.533
  recA Glaesserella parasuis strain SC1401

58.017

90.026

0.522
  recA Acinetobacter baumannii D1279779

61.371

84.252

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.939

85.827

0.514
  recA Pseudomonas stutzeri DSM 10701

60.436

84.252

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.436

84.252

0.509
  recA Vibrio cholerae strain A1552

60.436

84.252

0.509
  recA Neisseria gonorrhoeae MS11

60.252

83.202

0.501
  recA Neisseria gonorrhoeae MS11

60.252

83.202

0.501
  recA Neisseria gonorrhoeae strain FA1090

60.252

83.202

0.501
  recA Helicobacter pylori 26695

56.748

85.564

0.486
  recA Helicobacter pylori strain NCTC11637

56.748

85.564

0.486

Multiple sequence alignment