Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NWAT_RS03890 Genome accession   NC_014315
Coordinates   825296..826324 (+) Length   342 a.a.
NCBI ID   WP_013219849.1    Uniprot ID   D8KBY3
Organism   Nitrosococcus watsonii C-113     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 820296..831324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWAT_RS17270 - 822177..823604 (-) 1428 WP_232420201.1 AAA domain-containing protein -
  NWAT_RS03875 (Nwat_0789) - 823682..824029 (-) 348 WP_013219846.1 hypothetical protein -
  NWAT_RS03880 (Nwat_0790) pncC 824182..824673 (+) 492 WP_013219847.1 nicotinamide-nucleotide amidase -
  NWAT_RS03885 (Nwat_0791) thpR 824648..825190 (+) 543 WP_013219848.1 RNA 2',3'-cyclic phosphodiesterase -
  NWAT_RS03890 (Nwat_0792) recA 825296..826324 (+) 1029 WP_013219849.1 recombinase RecA Machinery gene
  NWAT_RS03895 (Nwat_0793) - 826333..826788 (+) 456 WP_013219850.1 regulatory protein RecX -
  NWAT_RS03900 (Nwat_0794) alaS 826814..829438 (+) 2625 WP_013219851.1 alanine--tRNA ligase -
  NWAT_RS03905 (Nwat_0795) - 829451..830692 (+) 1242 WP_013219852.1 aspartate kinase -
  NWAT_RS03910 (Nwat_0796) csrA 830956..831213 (+) 258 WP_013219853.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36741.13 Da        Isoelectric Point: 5.5575

>NTDB_id=37769 NWAT_RS03890 WP_013219849.1 825296..826324(+) (recA) [Nitrosococcus watsonii C-113]
MDENRKKALGAALSQIEKQFGKGAVMRLGDASIVREVEVISTGSLGLDIALGVGGLPRGRVVEIFGPEASGKTTLALQVA
AEAQALGGTAAFVDAEHALDPQYAERLGVNVEDLLVSQPDTGEQALEIADMLVRSGAVDVVVIDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGALKKGDEIVGN
ETRVKVVKNKMAPPFKQVSFDILYGSGVSREGEIIDLGVREGLIEKAGAWYSYKGERIGQGRDNVRQFLKEHRDIAQEIE
AHIREKLLPGKAALEEVEEVGT

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=37769 NWAT_RS03890 WP_013219849.1 825296..826324(+) (recA) [Nitrosococcus watsonii C-113]
ATGGACGAGAACCGGAAAAAGGCGCTAGGAGCTGCCCTCTCTCAGATTGAGAAGCAGTTTGGCAAAGGCGCCGTGATGCG
TCTTGGGGATGCGAGCATTGTACGCGAGGTCGAGGTAATCTCGACGGGGTCTTTAGGGCTCGATATCGCACTTGGGGTAG
GAGGATTGCCGCGGGGTCGCGTGGTCGAAATCTTTGGCCCGGAGGCGTCGGGCAAGACAACGTTAGCCCTGCAAGTAGCA
GCGGAAGCCCAGGCGTTGGGGGGAACGGCGGCTTTTGTGGACGCTGAACACGCCCTTGATCCCCAGTACGCCGAGCGATT
GGGCGTGAATGTTGAGGATCTTCTCGTCTCCCAGCCGGATACCGGAGAACAAGCCCTGGAAATTGCTGATATGTTGGTGC
GTTCAGGGGCAGTGGATGTGGTGGTCATAGACTCGGTGGCCGCGCTGACCCCGAAAGCAGAGATTGAGGGGGAAATGGGG
GACTCCCATGTGGGCTTGCAAGCCAGACTCATGTCCCAGGCCCTGCGCAAGCTTACCGCCAATATTAAGCGCTCCAATAC
TCTGGTGATCTTTATTAATCAAATCCGGATGAAAATTGGGGTGATGTTTGGGAGTCCAGAGACGACTACGGGTGGTAATG
CGCTTAAATTTTATGCTTCTGTACGGTTGGATATTCGACGAGTAGGGGCCCTTAAAAAGGGGGATGAAATCGTTGGTAAC
GAGACTCGGGTAAAAGTGGTTAAAAACAAAATGGCACCGCCTTTTAAACAAGTTTCCTTCGATATTCTTTATGGATCGGG
CGTTTCCCGGGAGGGAGAAATTATTGATTTAGGGGTCCGGGAAGGGCTTATCGAAAAGGCAGGCGCTTGGTACAGTTATA
AGGGTGAACGGATTGGTCAGGGCCGGGATAATGTGCGTCAGTTTCTCAAGGAGCACCGGGATATTGCCCAAGAGATCGAA
GCCCATATTCGGGAGAAGCTATTGCCGGGCAAGGCAGCACTAGAGGAAGTCGAAGAGGTGGGAACCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D8KBY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

76.829

95.906

0.737
  recA Pseudomonas stutzeri DSM 10701

76.22

95.906

0.731
  recA Acinetobacter baylyi ADP1

71.72

100

0.719
  recA Acinetobacter baumannii D1279779

71.429

100

0.716
  recA Neisseria gonorrhoeae MS11

72.222

94.737

0.684
  recA Neisseria gonorrhoeae MS11

72.222

94.737

0.684
  recA Neisseria gonorrhoeae strain FA1090

72.222

94.737

0.684
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.341

95.906

0.684
  recA Vibrio cholerae strain A1552

71.341

95.906

0.684
  recA Glaesserella parasuis strain SC1401

68.923

95.029

0.655
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

96.784

0.623
  recA Bacillus subtilis subsp. subtilis str. 168

65.528

94.152

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.415

95.906

0.608
  recA Helicobacter pylori strain NCTC11637

62.5

95.906

0.599
  recA Helicobacter pylori 26695

62.195

95.906

0.596
  recA Streptococcus pneumoniae Rx1

60.856

95.614

0.582
  recA Streptococcus pneumoniae D39

60.856

95.614

0.582
  recA Streptococcus pneumoniae R6

60.856

95.614

0.582
  recA Streptococcus pneumoniae TIGR4

60.856

95.614

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

61.491

94.152

0.579
  recA Streptococcus mitis SK321

58.754

98.538

0.579
  recA Streptococcus mutans UA159

60.736

95.322

0.579
  recA Streptococcus pyogenes NZ131

59.574

96.199

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.559

94.152

0.57
  recA Streptococcus mitis NCTC 12261

60.185

94.737

0.57
  recA Lactococcus lactis subsp. cremoris KW2

59.877

94.737

0.567

Multiple sequence alignment