Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPLT_RS05750 Genome accession   NC_017362
Coordinates   1190510..1191559 (+) Length   349 a.a.
NCBI ID   WP_000115543.1    Uniprot ID   -
Organism   Helicobacter pylori Lithuania75     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1185510..1196559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPLT_RS05730 (HPLT_05930) - 1185526..1186269 (+) 744 WP_014535057.1 carbonic anhydrase -
  HPLT_RS05735 (HPLT_05935) - 1186500..1187660 (-) 1161 WP_041200774.1 DUF874 family protein -
  HPLT_RS05740 (HPLT_05940) asd 1188093..1189133 (-) 1041 WP_000860911.1 aspartate-semialdehyde dehydrogenase -
  HPLT_RS05745 (HPLT_05945) hisS 1189120..1190448 (-) 1329 WP_000632517.1 histidine--tRNA ligase -
  HPLT_RS05750 (HPLT_05950) waaF 1190510..1191559 (+) 1050 WP_000115543.1 lipopolysaccharide heptosyltransferase II Regulator
  HPLT_RS05755 - 1191708..1191954 (-) 247 Protein_1097 hypothetical protein -
  HPLT_RS05760 (HPLT_05965) fusA 1192553..1194631 (-) 2079 WP_000101847.1 elongation factor G -
  HPLT_RS05765 (HPLT_05970) rpsG 1194643..1195110 (-) 468 WP_001254357.1 30S ribosomal protein S7 -
  HPLT_RS05770 (HPLT_05975) rpsL 1195126..1195533 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39466.07 Da        Isoelectric Point: 9.6680

>NTDB_id=37769 HPLT_RS05750 WP_000115543.1 1190510..1191559(+) (waaF) [Helicobacter pylori Lithuania75]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKNHYPNAHFILVGPQITCELFKKDEKIEAVFIDNTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSTFLLYATKTPIRIGFAQFFRSLFLSHAVTTAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHKIYFFGAKEDAIVSEEILKLIKGSLKNPLSFN
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHAAASVQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=37769 HPLT_RS05750 WP_000115543.1 1190510..1191559(+) (waaF) [Helicobacter pylori Lithuania75]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAAAACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACAACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTCTATTCCACTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGGTAACTACTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATAAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATCATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGCGGCTGCTAGCGTGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTAAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.209

98.567

0.367

Multiple sequence alignment