Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FGL76_RS05445 Genome accession   NZ_CP042393
Coordinates   1096431..1097576 (-) Length   381 a.a.
NCBI ID   WP_004901965.1    Uniprot ID   A0A5A5U0H9
Organism   Leuconostoc citreum strain CBA3623     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1091431..1102576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL76_RS05425 (FGL76_05425) - 1092129..1093010 (-) 882 WP_004904925.1 phosphate ABC transporter substrate-binding protein PstS family protein -
  FGL76_RS05430 (FGL76_05430) - 1093108..1094421 (-) 1314 WP_147002383.1 ATP-binding protein -
  FGL76_RS05435 (FGL76_05435) - 1094535..1095446 (-) 912 WP_004901961.1 phosphate ABC transporter substrate-binding protein -
  FGL76_RS05440 (FGL76_05440) - 1095630..1096319 (-) 690 WP_100666120.1 response regulator transcription factor -
  FGL76_RS05445 (FGL76_05445) recA 1096431..1097576 (-) 1146 WP_004901965.1 recombinase RecA Machinery gene
  FGL76_RS05450 (FGL76_05450) pgsA 1097707..1098288 (-) 582 WP_012305368.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FGL76_RS05455 (FGL76_05455) - 1098299..1099171 (-) 873 WP_147002384.1 helix-turn-helix domain-containing protein -
  FGL76_RS05460 (FGL76_05460) - 1099186..1100457 (-) 1272 WP_012305369.1 pitrilysin family protein -
  FGL76_RS05465 (FGL76_05465) - 1100454..1101731 (-) 1278 WP_040190509.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 40974.39 Da        Isoelectric Point: 4.7188

>NTDB_id=377679 FGL76_RS05445 WP_004901965.1 1096431..1097576(-) (recA) [Leuconostoc citreum strain CBA3623]
MVTKKTTKKDDKDSQAKGRKAALDEALKKIEKNFGKGSVMVLGDNALTQIETYPSGSVKLDVALGVGGYPKGRIIEIYGP
ESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRR
STQIKDGTDVTGNLTKVKVVKNKVAPPFKVAEIDIMYGKGVSQTGEILDLGAEQEIIRKAGAFYYYDDVKIGQGREKAKE
FLDDPENADMRQTIYEKVRNAFGIGDGETAESDETTADKQKGSETIELVSDTDDLTDEPIV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=377679 FGL76_RS05445 WP_004901965.1 1096431..1097576(-) (recA) [Leuconostoc citreum strain CBA3623]
ATGGTCACAAAAAAGACGACTAAAAAAGATGATAAAGATAGCCAAGCTAAAGGCCGAAAAGCCGCTTTAGATGAAGCCTT
AAAAAAAATTGAGAAAAATTTTGGTAAGGGTTCAGTCATGGTTTTAGGTGACAATGCTTTGACGCAAATTGAGACTTATC
CTTCTGGGTCGGTTAAGCTAGATGTTGCATTAGGTGTTGGTGGTTATCCCAAAGGCCGAATTATTGAAATATATGGACCA
GAATCCTCTGGAAAAACAACTTTAGCTTTACATGCGGTGGCTGAAGTGCAAAAGGCTGGTGGTACAGCAGCTTATATCGA
TGCGGAAAACGCTTTAGATGTAAAGTACGCTGAGGCATTGGGCGTACAAAAAGATGAATTGCTGCTATCACAACCAGATA
CTGGCGAACAAGGCTTAGAAATTGCTGATGCGCTAGTACAATCAGGTGCGGTCGACATTATTGTTGTTGATTCAGTCGCA
GCCCTTGTACCTCGAGCTGAAATTGAAGGTGAAATGGGTGATTCGCATGTTGGTTTGCAAGCACGATTAATGAGTCAAGC
GCTTCGTAAATTAGCTGGGACTTTAAATCGCACAGGAACCATTGCTATTTTTATTAACCAAATTCGTGAAAAAATTGGTG
TGATGTTTGGTAATCCTGAGACAACACCTGGTGGACGCGCGCTGAAGTTCTATTCAACCATTAGACTTGAAGTTCGTCGT
TCAACTCAAATTAAAGATGGTACGGATGTTACAGGTAACCTCACTAAGGTGAAGGTTGTAAAGAATAAAGTTGCCCCACC
ATTTAAAGTGGCAGAAATTGACATCATGTATGGCAAAGGTGTTTCTCAAACTGGTGAAATTTTAGATTTAGGTGCGGAAC
AAGAAATTATTCGCAAAGCTGGCGCTTTTTACTACTATGACGATGTGAAAATTGGTCAAGGCCGTGAAAAGGCAAAAGAA
TTTTTGGATGATCCAGAAAATGCCGATATGCGACAAACAATCTATGAAAAAGTTCGCAATGCTTTTGGTATAGGTGATGG
TGAAACAGCCGAATCCGATGAGACGACTGCAGACAAGCAAAAAGGCTCTGAGACGATAGAACTTGTTAGTGATACAGATG
ACTTGACAGATGAGCCAATTGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A5U0H9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

72.886

90.026

0.656
  recA Streptococcus mitis NCTC 12261

65

94.488

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

70.859

85.564

0.606
  recA Streptococcus mitis SK321

65.625

92.388

0.606
  recA Streptococcus pneumoniae D39

64.124

92.913

0.596
  recA Streptococcus pneumoniae Rx1

64.124

92.913

0.596
  recA Streptococcus pneumoniae R6

64.124

92.913

0.596
  recA Streptococcus pneumoniae TIGR4

64.124

92.913

0.596
  recA Lactococcus lactis subsp. cremoris KW2

64.103

92.126

0.591
  recA Streptococcus pyogenes NZ131

64.74

90.814

0.588
  recA Streptococcus mutans UA159

63.689

91.076

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.87

90.551

0.551
  recA Ralstonia pseudosolanacearum GMI1000

65.079

82.677

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.671

90.814

0.533
  recA Acinetobacter baylyi ADP1

60.059

88.714

0.533
  recA Glaesserella parasuis strain SC1401

58.017

90.026

0.522
  recA Acinetobacter baumannii D1279779

61.371

84.252

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.939

85.827

0.514
  recA Pseudomonas stutzeri DSM 10701

60.436

84.252

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.436

84.252

0.509
  recA Vibrio cholerae strain A1552

60.436

84.252

0.509
  recA Neisseria gonorrhoeae MS11

60.252

83.202

0.501
  recA Neisseria gonorrhoeae MS11

60.252

83.202

0.501
  recA Neisseria gonorrhoeae strain FA1090

60.252

83.202

0.501
  recA Helicobacter pylori 26695

56.748

85.564

0.486
  recA Helicobacter pylori strain NCTC11637

56.748

85.564

0.486

Multiple sequence alignment