Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FGL78_RS01545 Genome accession   NZ_CP042390
Coordinates   277141..278286 (-) Length   381 a.a.
NCBI ID   WP_029509631.1    Uniprot ID   A0AAP9EDW3
Organism   Leuconostoc lactis strain CBA3626     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 269247..278286 277141..278286 within 0


Gene organization within MGE regions


Location: 269247..278286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL78_RS01505 (FGL78_01505) pstB 269247..270017 (-) 771 WP_010003305.1 phosphate ABC transporter ATP-binding protein PstB -
  FGL78_RS01510 (FGL78_01510) pstB 270014..270853 (-) 840 WP_010003307.1 phosphate ABC transporter ATP-binding protein PstB -
  FGL78_RS01515 (FGL78_01515) pstA 270936..271820 (-) 885 WP_146975442.1 phosphate ABC transporter permease PstA -
  FGL78_RS01520 (FGL78_01520) pstC 271820..272743 (-) 924 WP_029509636.1 phosphate ABC transporter permease subunit PstC -
  FGL78_RS01525 (FGL78_01525) - 272839..273720 (-) 882 WP_146975445.1 phosphate ABC transporter substrate-binding protein PstS family protein -
  FGL78_RS01530 (FGL78_01530) - 273826..275181 (-) 1356 WP_146975447.1 ATP-binding protein -
  FGL78_RS01535 (FGL78_01535) - 275250..276158 (-) 909 WP_077281817.1 phosphate ABC transporter substrate-binding protein -
  FGL78_RS01540 (FGL78_01540) - 276337..277026 (-) 690 WP_029509632.1 response regulator transcription factor -
  FGL78_RS01545 (FGL78_01545) recA 277141..278286 (-) 1146 WP_029509631.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 40816.32 Da        Isoelectric Point: 4.6255

>NTDB_id=377616 FGL78_RS01545 WP_029509631.1 277141..278286(-) (recA) [Leuconostoc lactis strain CBA3626]
MVTKKTTKKDDKDSQASGRKAALDEALKRIEKNFGKGSIMVLGDNALTQVETYPSGSVKLDVALGVGGYPKGRIIEIYGP
ESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLNRTGTVAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRR
STQIKDGTDVTGNLTKVKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGAEQEIIRKAGAFYYYGDIKVGQGREKAKE
FLDAPENAAMRQEIYAKVRNAFGIGDGELPVEEADDETIEAPETLALVTDDDDDLTDEPIV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=377616 FGL78_RS01545 WP_029509631.1 277141..278286(-) (recA) [Leuconostoc lactis strain CBA3626]
ATGGTCACAAAAAAGACGACTAAAAAAGACGATAAAGATAGTCAAGCAAGCGGCCGTAAGGCGGCACTTGATGAAGCTTT
AAAGCGTATCGAAAAGAATTTCGGTAAGGGATCAATCATGGTGTTGGGTGATAATGCACTGACACAAGTTGAGACTTATC
CTTCAGGATCAGTTAAGCTAGATGTTGCTTTAGGCGTCGGTGGCTATCCTAAAGGACGTATTATTGAAATTTATGGGCCA
GAATCTTCTGGTAAAACAACGTTGGCGTTACACGCCGTTGCTGAAGTGCAAAAAGCCGGTGGGACAGCCGCCTATATTGA
TGCCGAAAATGCCTTGGATGTGAAATACGCTGAAGCTTTGGGTGTTAAAAAGGACGAATTACTTTTGTCACAACCTGATA
CTGGTGAACAAGGGTTAGAAATTGCGGATGCGTTGGTACAATCTGGGGCAGTGGATATCATTGTTGTGGATTCTGTGGCA
GCGTTGGTACCACGTGCAGAAATCGAGGGGGAAATGGGCGACTCACACGTCGGCTTGCAAGCCCGTTTGATGAGCCAAGC
CTTACGTAAATTAGCTGGTACGTTGAACCGTACTGGGACGGTTGCGATTTTCATCAACCAAATTCGTGAAAAGATTGGGG
TGATGTTTGGTAACCCCGAAACGACCCCTGGTGGCCGTGCGTTGAAATTCTATTCAACGATTCGTTTGGAAGTGCGTCGG
TCAACCCAAATTAAAGATGGCACAGATGTGACTGGAAACTTAACGAAAGTCAAAGTGGTTAAGAATAAGGTGGCGCCACC
ATTTAAGGTTGCTGAAGTTGATATCATGTACGGGAAGGGTATTTCACAAACTGGTGAAATTTTAGACCTCGGTGCGGAAC
AAGAAATTATCCGTAAGGCCGGTGCCTTCTACTATTACGGTGATATCAAGGTTGGCCAAGGCCGTGAAAAAGCGAAAGAA
TTCTTGGATGCACCCGAAAATGCTGCGATGCGTCAAGAAATCTATGCTAAAGTTCGTAACGCCTTTGGGATTGGTGATGG
TGAATTGCCAGTAGAAGAGGCTGATGATGAGACAATTGAAGCCCCAGAAACACTGGCATTAGTCACTGATGACGATGATG
ATTTAACGGACGAACCAATTGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

71.671

92.651

0.664
  recA Streptococcus mitis SK321

65.928

94.751

0.625
  recA Streptococcus mitis NCTC 12261

65.46

94.226

0.617
  recA Streptococcus mutans UA159

62.602

96.85

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

70.427

86.089

0.606
  recA Streptococcus pneumoniae R6

66.279

90.289

0.598
  recA Streptococcus pneumoniae Rx1

66.279

90.289

0.598
  recA Streptococcus pneumoniae D39

66.279

90.289

0.598
  recA Streptococcus pneumoniae TIGR4

66.279

90.289

0.598
  recA Lactococcus lactis subsp. cremoris KW2

64.672

92.126

0.596
  recA Streptococcus pyogenes NZ131

65.029

90.814

0.591
  recA Ralstonia pseudosolanacearum GMI1000

65.714

82.677

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.249

90.814

0.538
  recA Acinetobacter baylyi ADP1

59.078

91.076

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.475

90.026

0.535
  recA Neisseria gonorrhoeae strain FA1090

60.059

88.714

0.533
  recA Neisseria gonorrhoeae MS11

60.059

88.714

0.533
  recA Neisseria gonorrhoeae MS11

60.059

88.714

0.533
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.245

85.827

0.517
  recA Acinetobacter baumannii D1279779

61.371

84.252

0.517
  recA Glaesserella parasuis strain SC1401

57.31

89.764

0.514
  recA Vibrio cholerae strain A1552

60.436

84.252

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.436

84.252

0.509
  recA Pseudomonas stutzeri DSM 10701

60.125

84.252

0.507
  recA Helicobacter pylori strain NCTC11637

55.394

90.026

0.499
  recA Helicobacter pylori 26695

55.394

90.026

0.499

Multiple sequence alignment