Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FGL86_RS01915 Genome accession   NZ_CP042382
Coordinates   407785..408843 (-) Length   352 a.a.
NCBI ID   WP_147183016.1    Uniprot ID   A0A5B8SP20
Organism   Pistricoccus aurantiacus strain CBA4606     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 402785..413843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL86_RS01895 (FGL86_01895) csrA 402855..403049 (-) 195 WP_147183013.1 carbon storage regulator CsrA -
  FGL86_RS01900 (FGL86_01900) - 403250..404500 (-) 1251 WP_147183014.1 aspartate kinase -
  FGL86_RS01905 (FGL86_01905) alaS 404550..407159 (-) 2610 WP_147183015.1 alanine--tRNA ligase -
  FGL86_RS01910 (FGL86_01910) - 407320..407781 (-) 462 WP_147186048.1 regulatory protein RecX -
  FGL86_RS01915 (FGL86_01915) recA 407785..408843 (-) 1059 WP_147183016.1 recombinase RecA Machinery gene
  FGL86_RS01920 (FGL86_01920) - 408985..409518 (-) 534 WP_147183017.1 CinA family protein -
  FGL86_RS01925 (FGL86_01925) mutS 409610..412192 (+) 2583 WP_147183018.1 DNA mismatch repair protein MutS -
  FGL86_RS01930 (FGL86_01930) fdxA 412405..412728 (+) 324 WP_147183019.1 ferredoxin FdxA -
  FGL86_RS01935 (FGL86_01935) - 412803..413084 (-) 282 WP_147183020.1 type II toxin-antitoxin system RelE/ParE family toxin -
  FGL86_RS01940 (FGL86_01940) - 413081..413353 (-) 273 WP_147183021.1 ribbon-helix-helix protein, CopG family -
  FGL86_RS01945 (FGL86_01945) - 413535..413765 (+) 231 WP_147183022.1 type II toxin-antitoxin system prevent-host-death family antitoxin -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37759.10 Da        Isoelectric Point: 5.1386

>NTDB_id=377516 FGL86_RS01915 WP_147183016.1 407785..408843(-) (recA) [Pistricoccus aurantiacus strain CBA4606]
MAQDDNRSKALNAALSQIERQFGKGAVMRLGDTPRVVMPSVSTGSLGLDIALGIGGLPFGRVVEIYGPESSGKTTLTLSV
IAQAQKQGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGNIKNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKQGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDLGVQCGLVDKAGAWYSYKGNKIGQGKANAAQFLEDNPAIMDEI
ESGIRGQLLAQPEPKAKQEEPALEEQPQDEKL

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=377516 FGL86_RS01915 WP_147183016.1 407785..408843(-) (recA) [Pistricoccus aurantiacus strain CBA4606]
ATGGCACAGGATGACAACCGCTCCAAGGCGCTCAACGCGGCGCTCTCGCAAATCGAGCGACAATTCGGCAAGGGCGCCGT
GATGCGCTTGGGAGATACTCCTCGGGTCGTCATGCCCTCGGTATCCACCGGCTCCCTGGGGCTGGATATCGCCTTGGGAA
TCGGCGGCCTACCTTTCGGTCGGGTGGTAGAGATCTACGGCCCGGAATCTTCCGGCAAGACTACCCTGACCCTTTCCGTG
ATCGCCCAGGCCCAGAAGCAGGGCAAGACCTGCGCCTTCATCGACGCGGAACATGCTCTCGATCCCAGCTACGCGGAAAA
GCTCGGGGTCAATCTCGACGACCTGCTGGTCTCCCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCTGCGACATGCTAG
TGCGCTCCGGCGGTGTGGACGTGATCATCATCGATTCCGTGGCGGCGCTGACCCCCCGGGCGGAGATCGAGGGGGAAATG
GGCGATTCCCACGTCGGCCTGCAGGCGCGTTTGATGTCCCAGGCACTGCGCAAGATCACCGGTAACATCAAGAACGCCAA
CTGCATGGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGCGTAATGTTCGGCAGCCCGGAAACCACCACCGGCGGCA
ACGCCCTCAAGTTCTACTCCAGCGTGCGCCTGGACATCCGCCGCACCGGCTCCGTGAAGCAGGGCGACGAGGTAACCGGC
AACGAGACCCGGGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCTTTCCGCCAGGCGGAGTTCCAGATTCTCTACGGCAA
GGGTATCTATCACGCCGGCGAAGTGGTCGATCTGGGGGTGCAGTGTGGCCTGGTCGATAAAGCAGGAGCCTGGTACAGCT
ACAAAGGCAACAAGATCGGCCAGGGCAAGGCCAACGCGGCGCAGTTCCTCGAGGACAATCCGGCGATCATGGACGAGATC
GAAAGCGGTATTCGTGGGCAACTGCTGGCCCAGCCGGAGCCCAAGGCGAAGCAGGAAGAGCCGGCTCTGGAAGAGCAGCC
CCAGGATGAAAAGCTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8SP20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

82.515

92.614

0.764
  recA Acinetobacter baylyi ADP1

74.063

98.58

0.73
  recA Acinetobacter baumannii D1279779

73.547

97.727

0.719
  recA Glaesserella parasuis strain SC1401

68.75

100

0.688
  recA Vibrio cholerae strain A1552

70.909

93.75

0.665
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.909

93.75

0.665
  recA Neisseria gonorrhoeae MS11

71.429

91.477

0.653
  recA Neisseria gonorrhoeae MS11

71.429

91.477

0.653
  recA Neisseria gonorrhoeae strain FA1090

71.429

91.477

0.653
  recA Ralstonia pseudosolanacearum GMI1000

71.429

89.489

0.639
  recA Helicobacter pylori 26695

60.983

98.295

0.599
  recA Helicobacter pylori strain NCTC11637

60.405

98.295

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

92.614

0.591
  recA Streptococcus mutans UA159

58.405

99.716

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.778

94.886

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

63.125

90.909

0.574
  recA Streptococcus pneumoniae Rx1

55.493

100

0.56
  recA Streptococcus pneumoniae D39

55.493

100

0.56
  recA Streptococcus pneumoniae R6

55.493

100

0.56
  recA Streptococcus pneumoniae TIGR4

55.493

100

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

60.308

92.33

0.557
  recA Streptococcus mitis NCTC 12261

59.509

92.614

0.551
  recA Streptococcus pyogenes NZ131

59.692

92.33

0.551
  recA Streptococcus mitis SK321

58.896

92.614

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.462

92.33

0.54
  recA Lactococcus lactis subsp. cremoris KW2

56.656

91.761

0.52

Multiple sequence alignment