Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FGL90_RS08395 Genome accession   NZ_CP042371
Coordinates   1720212..1721354 (+) Length   380 a.a.
NCBI ID   WP_010620693.1    Uniprot ID   A0A4R5NIE6
Organism   Secundilactobacillus malefermentans strain CBA3618     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1715212..1726354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL90_RS08375 (FGL90_08375) yfmH 1716321..1717613 (+) 1293 WP_010620689.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  FGL90_RS08380 (FGL90_08380) - 1717729..1718685 (+) 957 WP_147657682.1 RodZ family helix-turn-helix domain-containing protein -
  FGL90_RS08385 (FGL90_08385) pgsA 1718753..1719340 (+) 588 WP_010620691.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FGL90_RS08390 (FGL90_08390) - 1719388..1720122 (+) 735 WP_010620692.1 nicotinamide-nucleotide amidohydrolase family protein -
  FGL90_RS08395 (FGL90_08395) recA 1720212..1721354 (+) 1143 WP_010620693.1 recombinase RecA Machinery gene
  FGL90_RS08400 (FGL90_08400) rny 1721561..1723120 (+) 1560 WP_010620694.1 ribonuclease Y -
  FGL90_RS08405 (FGL90_08405) - 1723226..1724029 (+) 804 WP_010620695.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40975.41 Da        Isoelectric Point: 6.5332

>NTDB_id=377487 FGL90_RS08395 WP_010620693.1 1720212..1721354(+) (recA) [Secundilactobacillus malefermentans strain CBA3618]
MADERKAALDAALKRIEKNFGKGAIMRMGDQPDTKIATVSSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPAYATNLGVNIEDLLLSQPDTGEQGLEIADALVTSGAVDLVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTINKTHTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEIRRAEQIKDGTNIIGNR
TRIKVVKNKVAPPFKRAEVDIMYGEGISQTGELVDMAADKDIIEKAGSWYSYGEERIGQGRENAKKYLADHTDVMNEVRL
KVRKAYGMDEATEGKKSADKDAVKDTKDTKDTKDEKTKSTKTTKASKEAKETKDSSEAAK

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=377487 FGL90_RS08395 WP_010620693.1 1720212..1721354(+) (recA) [Secundilactobacillus malefermentans strain CBA3618]
ATGGCTGACGAGCGAAAAGCTGCTTTAGATGCGGCATTGAAAAGAATTGAGAAAAACTTTGGAAAAGGCGCCATCATGCG
AATGGGTGACCAACCAGATACTAAAATTGCAACTGTTTCATCCGGTTCATTGGCATTAGATGATGCATTGGGTGTAGGCG
GTTATCCAAGGGGCCGAATTGTTGAAATTTATGGACCTGAAAGTTCTGGTAAAACAACCGTTGCGTTGCATGCTGTTGCG
GAAGTTCAAAAACAAGGTGGGACAGCTGCTTATATTGATGCTGAAAATGCTTTGGATCCTGCCTATGCGACAAACCTCGG
TGTTAATATCGAAGATTTACTCTTATCTCAGCCAGATACCGGTGAGCAAGGTTTGGAAATTGCTGATGCCTTAGTTACCA
GTGGCGCTGTTGATCTTGTTGTTGTTGATTCTGTTGCAGCTCTAGTTCCTAGAGCTGAAATCGAAGGTGAAATGGGAGAT
GCGCACGTTGGGTTACAAGCGCGGCTAATGTCCCAAGCACTTCGGAAGCTTTCTGGAACCATCAATAAAACGCATACTAT
TGCTATTTTTATTAACCAAATCCGTGAAAAAATTGGCGTTATGTTCGGTAATCCCGAAACGACTCCAGGTGGACGGGCCC
TTAAATTCTACTCAACGATTCGACTAGAGATTAGACGAGCTGAGCAAATTAAGGATGGCACCAATATTATCGGTAACCGG
ACGCGAATTAAAGTTGTTAAGAATAAGGTAGCACCGCCTTTCAAACGTGCAGAAGTGGACATTATGTATGGCGAAGGAAT
TTCGCAAACTGGTGAGCTAGTCGATATGGCTGCTGATAAAGATATTATTGAAAAAGCCGGATCATGGTACTCATATGGTG
AAGAAAGAATTGGCCAAGGCCGTGAAAACGCTAAAAAATATCTCGCTGATCATACAGATGTTATGAATGAGGTTCGATTA
AAAGTTCGTAAAGCGTATGGCATGGATGAAGCCACTGAGGGTAAGAAGTCAGCGGATAAAGATGCTGTTAAGGATACAAA
AGACACAAAAGACACAAAAGATGAAAAAACAAAATCGACTAAGACGACTAAAGCTTCAAAAGAAGCCAAAGAGACTAAGG
ATTCTTCAGAAGCAGCAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R5NIE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

86.103

87.105

0.75
  recA Streptococcus mutans UA159

67.297

97.368

0.655
  recA Bacillus subtilis subsp. subtilis str. 168

74.772

86.579

0.647
  recA Streptococcus mitis NCTC 12261

67.403

95.263

0.642
  recA Streptococcus pneumoniae D39

66.667

94.737

0.632
  recA Streptococcus pneumoniae Rx1

66.667

94.737

0.632
  recA Streptococcus pneumoniae R6

66.667

94.737

0.632
  recA Streptococcus pneumoniae TIGR4

66.667

94.737

0.632
  recA Streptococcus mitis SK321

70.088

89.737

0.629
  recA Streptococcus pyogenes NZ131

71.687

87.368

0.626
  recA Lactococcus lactis subsp. cremoris KW2

67.665

87.895

0.595
  recA Neisseria gonorrhoeae strain FA1090

62.722

88.947

0.558
  recA Neisseria gonorrhoeae MS11

62.722

88.947

0.558
  recA Neisseria gonorrhoeae MS11

62.722

88.947

0.558
  recA Ralstonia pseudosolanacearum GMI1000

64.856

82.368

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.846

85.526

0.529
  recA Glaesserella parasuis strain SC1401

57.102

92.632

0.529
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.28

86.316

0.529
  recA Acinetobacter baylyi ADP1

61.42

85.263

0.524
  recA Pseudomonas stutzeri DSM 10701

61.3

85

0.521
  recA Acinetobacter baumannii D1279779

60.802

85.263

0.518
  recA Vibrio cholerae strain A1552

60.494

85.263

0.516
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.494

85.263

0.516
  recA Helicobacter pylori strain NCTC11637

58.359

86.579

0.505
  recA Helicobacter pylori 26695

58.359

86.579

0.505
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.313

88.158

0.505

Multiple sequence alignment