Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FQN58_RS12210 Genome accession   NZ_CP042282
Coordinates   2892643..2893677 (+) Length   344 a.a.
NCBI ID   WP_004312516.1    Uniprot ID   A0A372Z374
Organism   Bacteroides xylanisolvens strain APCS1/XY     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2887643..2898677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQN58_RS12190 (FQN58_12430) - 2888631..2889419 (-) 789 WP_004313951.1 META domain-containing protein -
  FQN58_RS12195 (FQN58_12435) - 2889565..2890848 (+) 1284 WP_074635604.1 hypothetical protein -
  FQN58_RS12200 (FQN58_12440) - 2890939..2892132 (+) 1194 WP_004312514.1 saccharopine dehydrogenase family protein -
  FQN58_RS12205 (FQN58_12445) bcp 2892161..2892616 (+) 456 WP_004312515.1 thioredoxin-dependent thiol peroxidase -
  FQN58_RS12210 (FQN58_12450) recA 2892643..2893677 (+) 1035 WP_004312516.1 recombinase RecA Machinery gene
  FQN58_RS12215 (FQN58_12455) - 2893797..2894789 (-) 993 WP_004312517.1 putative sulfate exporter family transporter -
  FQN58_RS12220 (FQN58_12460) - 2894912..2895286 (-) 375 WP_008021320.1 YccF domain-containing protein -
  FQN58_RS12225 (FQN58_12465) - 2895351..2896616 (-) 1266 WP_212135585.1 ATP-binding protein -
  FQN58_RS12230 (FQN58_12470) - 2896787..2898169 (-) 1383 WP_009040394.1 BACON domain-containing carbohydrate-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37247.73 Da        Isoelectric Point: 5.2016

>NTDB_id=376588 FQN58_RS12210 WP_004312516.1 2892643..2893677(+) (recA) [Bacteroides xylanisolvens strain APCS1/XY]
MAKKDELNFETDNKMASSEKLKALQAAMEKIEKSFGKGSIMKMGDDSVEQVEVIPTGSIALNVALGVGGYPRGRIIEIYG
PESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDDLYISQPDNGEQALEIAEQLIRSSAIDIIVIDSV
AALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIR
GSQPIKDGEEILGKLTKVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGRDAAK
QCIMDNPELAEELEGLIFEELKKK

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=376588 FQN58_RS12210 WP_004312516.1 2892643..2893677(+) (recA) [Bacteroides xylanisolvens strain APCS1/XY]
ATGGCAAAAAAAGACGAACTTAATTTTGAAACAGATAATAAAATGGCATCAAGCGAAAAACTAAAAGCCTTACAGGCTGC
CATGGAAAAGATAGAAAAGAGCTTCGGTAAAGGTTCTATCATGAAAATGGGTGATGATAGTGTTGAACAAGTAGAAGTGA
TCCCGACAGGCTCTATTGCCCTGAACGTGGCACTTGGCGTTGGAGGTTACCCTAGAGGTAGAATCATCGAAATCTATGGC
CCGGAGTCTTCCGGTAAAACAACATTGGCTATCCACGCCATTGCTGAAGCACAAAAGGCCGGCGGTATCGCTGCTTTTAT
TGATGCCGAACACGCTTTCGACCGTTTCTACGCATCTAAACTGGGCGTAAATATCGATGATCTTTATATCTCTCAACCGG
ATAACGGAGAGCAGGCGTTGGAGATTGCGGAACAACTGATTCGTTCTTCTGCTATTGACATCATCGTTATTGACTCTGTA
GCCGCACTGACTCCTAAAGCGGAAATCGAAGGCGACATGGGTGACAACAAAGTAGGCCTTCAGGCACGTTTGATGTCGCA
GGCACTTCGTAAGTTGACAGCTGCTGTGAGCAAGACACGTACTACTTGTATTTTCATCAACCAGTTGCGTGAGAAAATCG
GTGTTATGTTCGGTAACCCGGAAACAACAACCGGTGGTAACGCTTTGAAGTTCTACGCTTCTGTACGTCTGGATATCCGT
GGTAGCCAACCGATCAAAGATGGCGAAGAGATTCTCGGTAAACTGACTAAGGTGAAAGTGGTGAAGAATAAAGTAGCACC
TCCTTTCCGCAAAGCAGAATTTGACATCATGTTCGGTGAGGGTATCTCCCATTCCGGAGAAATCATCGATTTGGGTGCTG
ACTTGGGAATCATCAAGAAGAGCGGTTCATGGTATAGCTACAACGATACTAAGTTAGGACAAGGACGTGATGCCGCCAAA
CAATGTATCATGGATAATCCTGAACTGGCTGAAGAACTGGAAGGATTAATCTTTGAAGAATTGAAGAAGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372Z374

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

69.208

99.128

0.686
  recA Ralstonia pseudosolanacearum GMI1000

67.077

94.477

0.634
  recA Neisseria gonorrhoeae strain FA1090

66.46

93.605

0.622
  recA Neisseria gonorrhoeae MS11

66.46

93.605

0.622
  recA Neisseria gonorrhoeae MS11

66.46

93.605

0.622
  recA Streptococcus mitis SK321

63.018

98.256

0.619
  recA Streptococcus mitis NCTC 12261

63.018

98.256

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.619

91.57

0.619
  recA Streptococcus pneumoniae R6

62.426

98.256

0.613
  recA Streptococcus pneumoniae Rx1

62.426

98.256

0.613
  recA Streptococcus pneumoniae D39

62.426

98.256

0.613
  recA Streptococcus pneumoniae TIGR4

62.426

98.256

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

67.308

90.698

0.61
  recA Glaesserella parasuis strain SC1401

63.253

96.512

0.61
  recA Streptococcus pyogenes NZ131

61.538

98.256

0.605
  recA Streptococcus mutans UA159

60.947

98.256

0.599
  recA Lactococcus lactis subsp. cremoris KW2

60.947

98.256

0.599
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.059

98.256

0.59
  recA Acinetobacter baylyi ADP1

62.154

94.477

0.587
  recA Acinetobacter baumannii D1279779

62.733

93.605

0.587
  recA Helicobacter pylori strain NCTC11637

63.608

91.86

0.584
  recA Helicobacter pylori 26695

63.608

91.86

0.584
  recA Vibrio cholerae strain A1552

62.112

93.605

0.581
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

93.605

0.581
  recA Pseudomonas stutzeri DSM 10701

61.801

93.605

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

62.382

92.733

0.578

Multiple sequence alignment