Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | FQN08_RS06815 | Genome accession | NZ_CP042267 |
| Coordinates | 1408604..1409650 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Mta-79 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1403269..1469709 | 1408604..1409650 | within | 0 |
Gene organization within MGE regions
Location: 1403269..1469709
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FQN08_RS06800 (FQN08_06800) | mnmH | 1405401..1406459 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| FQN08_RS06805 (FQN08_06805) | rimO | 1406453..1407787 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| FQN08_RS06810 (FQN08_06810) | pgsA | 1407774..1408316 (+) | 543 | WP_021360474.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| FQN08_RS06815 (FQN08_06815) | recA | 1408604..1409650 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| FQN08_RS06820 (FQN08_06820) | rny | 1409826..1411367 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| FQN08_RS06825 (FQN08_06825) | - | 1412002..1413783 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| FQN08_RS06830 (FQN08_06830) | lepB | 1413865..1414395 (-) | 531 | WP_021360477.1 | signal peptidase I | - |
| FQN08_RS06835 (FQN08_06835) | - | 1414435..1415259 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| FQN08_RS06840 (FQN08_06840) | - | 1415516..1416424 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| FQN08_RS06845 (FQN08_06845) | purB | 1416568..1418013 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| FQN08_RS06850 (FQN08_06850) | - | 1418325..1418777 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| FQN08_RS06855 (FQN08_06855) | - | 1419112..1420308 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| FQN08_RS06860 (FQN08_06860) | galT | 1420693..1421643 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| FQN08_RS06865 (FQN08_06865) | - | 1421804..1422556 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| FQN08_RS06870 (FQN08_06870) | - | 1422648..1423424 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| FQN08_RS06875 (FQN08_06875) | - | 1423739..1425637 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| FQN08_RS06880 (FQN08_06880) | - | 1425765..1426886 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| FQN08_RS06885 (FQN08_06885) | - | 1427085..1427417 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| FQN08_RS06890 (FQN08_06890) | - | 1427404..1428462 (+) | 1059 | WP_021367719.1 | DUF1700 domain-containing protein | - |
| FQN08_RS06895 (FQN08_06895) | - | 1428455..1429525 (+) | 1071 | WP_003438380.1 | DUF4097 family beta strand repeat-containing protein | - |
| FQN08_RS06900 (FQN08_06900) | - | 1429627..1430163 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| FQN08_RS06905 (FQN08_06905) | - | 1430279..1430986 (+) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| FQN08_RS06910 (FQN08_06910) | - | 1430988..1431704 (+) | 717 | WP_021360481.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| FQN08_RS06915 (FQN08_06915) | - | 1431706..1432464 (+) | 759 | WP_021360482.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| FQN08_RS06920 (FQN08_06920) | - | 1432599..1433987 (+) | 1389 | WP_021360483.1 | two-component system sensor histidine kinase | - |
| FQN08_RS06925 (FQN08_06925) | - | 1434063..1434884 (-) | 822 | WP_009896253.1 | pyridoxamine kinase | - |
| FQN08_RS06930 (FQN08_06930) | - | 1435135..1436289 (+) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| FQN08_RS06935 (FQN08_06935) | - | 1436472..1436672 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| FQN08_RS06940 (FQN08_06940) | - | 1437093..1437521 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| FQN08_RS06945 (FQN08_06945) | - | 1437664..1438419 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| FQN08_RS06955 (FQN08_06955) | - | 1439120..1439626 (-) | 507 | WP_011861186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| FQN08_RS06960 (FQN08_06960) | - | 1439708..1440028 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| FQN08_RS06965 (FQN08_06965) | - | 1440197..1440394 (+) | 198 | WP_011861187.1 | helix-turn-helix transcriptional regulator | - |
| FQN08_RS06970 (FQN08_06970) | - | 1440499..1440939 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| FQN08_RS06975 (FQN08_06975) | - | 1441188..1441631 (+) | 444 | WP_021360485.1 | phage tail terminator family protein | - |
| FQN08_RS06980 (FQN08_06980) | - | 1441636..1442700 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| FQN08_RS06985 (FQN08_06985) | - | 1442714..1443142 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| FQN08_RS06990 (FQN08_06990) | - | 1443268..1443714 (+) | 447 | WP_009902432.1 | phage tail assembly chaperone | - |
| FQN08_RS06995 (FQN08_06995) | - | 1443741..1443908 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| FQN08_RS07000 (FQN08_07000) | - | 1443908..1446361 (+) | 2454 | WP_003438437.1 | hypothetical protein | - |
| FQN08_RS07005 (FQN08_07005) | - | 1446361..1446783 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| FQN08_RS07010 (FQN08_07010) | - | 1447065..1448594 (+) | 1530 | WP_021360487.1 | NlpC/P60 family protein | - |
| FQN08_RS07015 (FQN08_07015) | - | 1448610..1448936 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| FQN08_RS07020 (FQN08_07020) | - | 1448936..1449364 (+) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| FQN08_RS07025 (FQN08_07025) | - | 1449357..1450409 (+) | 1053 | WP_021360488.1 | baseplate J/gp47 family protein | - |
| FQN08_RS07030 (FQN08_07030) | - | 1450406..1451104 (+) | 699 | WP_003428156.1 | putative phage tail protein | - |
| FQN08_RS07035 (FQN08_07035) | - | 1451105..1452091 (+) | 987 | WP_021360489.1 | phage tail protein | - |
| FQN08_RS07040 (FQN08_07040) | - | 1452113..1457344 (+) | 5232 | WP_021360490.1 | RCC1 domain-containing protein | - |
| FQN08_RS07045 (FQN08_07045) | - | 1457361..1457714 (+) | 354 | WP_009902444.1 | CD1375 family protein | - |
| FQN08_RS07050 (FQN08_07050) | - | 1457977..1458237 (+) | 261 | WP_003419670.1 | hypothetical protein | - |
| FQN08_RS07055 (FQN08_07055) | - | 1458458..1458913 (-) | 456 | WP_003419674.1 | hypothetical protein | - |
| FQN08_RS07060 (FQN08_07060) | - | 1459141..1459560 (-) | 420 | WP_003438466.1 | helix-turn-helix domain-containing protein | - |
| FQN08_RS07065 (FQN08_07065) | - | 1459859..1460068 (+) | 210 | WP_003428146.1 | helix-turn-helix transcriptional regulator | - |
| FQN08_RS07070 (FQN08_07070) | - | 1460100..1460309 (+) | 210 | WP_009889160.1 | hypothetical protein | - |
| FQN08_RS07075 (FQN08_07075) | - | 1460526..1460858 (-) | 333 | WP_021403541.1 | helix-turn-helix domain-containing protein | - |
| FQN08_RS07080 (FQN08_07080) | - | 1461344..1463836 (-) | 2493 | WP_009896283.1 | MFS transporter | - |
| FQN08_RS07085 (FQN08_07085) | - | 1463850..1464392 (-) | 543 | WP_003438468.1 | TetR/AcrR family transcriptional regulator | - |
| FQN08_RS07090 (FQN08_07090) | - | 1464896..1465345 (+) | 450 | WP_021417167.1 | JAB domain-containing protein | - |
| FQN08_RS07095 (FQN08_07095) | - | 1465436..1466260 (-) | 825 | WP_021417169.1 | hypothetical protein | - |
| FQN08_RS07100 (FQN08_07100) | - | 1466392..1467342 (+) | 951 | WP_021427184.1 | DNA cytosine methyltransferase | - |
| FQN08_RS07105 (FQN08_07105) | - | 1467562..1467918 (-) | 357 | WP_021417170.1 | helix-turn-helix domain-containing protein | - |
| FQN08_RS19260 | - | 1468086..1468259 (+) | 174 | WP_021417166.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=376413 FQN08_RS06815 WP_003428218.1 1408604..1409650(+) (recA) [Clostridioides difficile strain Mta-79]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=376413 FQN08_RS06815 WP_003428218.1 1408604..1409650(+) (recA) [Clostridioides difficile strain Mta-79]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.