Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FPZ54_RS05020 Genome accession   NZ_CP042239
Coordinates   1040376..1041446 (-) Length   356 a.a.
NCBI ID   WP_145845471.1    Uniprot ID   -
Organism   Sphingomonas suaedae strain XS-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1035376..1046446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPZ54_RS05005 (FPZ54_05005) - 1036851..1038101 (-) 1251 WP_145845468.1 Xaa-Pro peptidase family protein -
  FPZ54_RS05010 (FPZ54_05010) - 1038098..1039408 (-) 1311 WP_239019717.1 dicarboxylate/amino acid:cation symporter -
  FPZ54_RS05015 (FPZ54_05015) - 1039434..1040069 (-) 636 WP_145845469.1 glutathione S-transferase N-terminal domain-containing protein -
  FPZ54_RS05020 (FPZ54_05020) recA 1040376..1041446 (-) 1071 WP_145845471.1 recombinase RecA Machinery gene
  FPZ54_RS05025 (FPZ54_05025) - 1041586..1042155 (+) 570 WP_145845472.1 DNA-3-methyladenine glycosylase I -
  FPZ54_RS05030 (FPZ54_05030) - 1042188..1042649 (+) 462 WP_145845473.1 Rrf2 family transcriptional regulator -
  FPZ54_RS05035 (FPZ54_05035) - 1042639..1043334 (+) 696 WP_145845475.1 class I SAM-dependent methyltransferase -
  FPZ54_RS05040 (FPZ54_05040) - 1043381..1044391 (+) 1011 WP_145845476.1 adenosine deaminase -
  FPZ54_RS05045 (FPZ54_05045) - 1044391..1044909 (+) 519 WP_145845477.1 phosphoribosyltransferase family protein -
  FPZ54_RS05050 (FPZ54_05050) - 1044902..1045264 (-) 363 WP_145845478.1 response regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38086.78 Da        Isoelectric Point: 5.5616

>NTDB_id=376112 FPZ54_RS05020 WP_145845471.1 1040376..1041446(-) (recA) [Sphingomonas suaedae strain XS-10]
MAASLKVIEGKMGISPDKQKALDAALAQIDRAFGKGSAMKLGSKETMQVEAISTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLALHTIAEAQKTGGVAAFVDAEHALDPVYAKKLGVNIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVAA
LVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRT
GQIKDRDDIIGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKIGEILDLGVKAGLVEKAGAWFSYDSIRIGQGRENAKTF
LKENPDVCARLEAAIRGRTDQVAEEMMTGPDAEDDL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=376112 FPZ54_RS05020 WP_145845471.1 1040376..1041446(-) (recA) [Sphingomonas suaedae strain XS-10]
ATGGCAGCTTCCCTCAAGGTGATCGAAGGAAAGATGGGCATTTCTCCGGACAAGCAAAAGGCGCTCGACGCAGCGCTGGC
ACAGATCGACCGCGCATTCGGCAAGGGTAGCGCGATGAAGCTCGGCTCTAAGGAGACGATGCAGGTCGAAGCGATCTCGA
CCGGCTCGCTCGGGCTCGACATCGCCCTTGGCGTCGGCGGCCTGCCGCGCGGGCGCGTAATCGAGATCTATGGCCCGGAA
AGCTCGGGCAAGACCACGCTGGCGCTGCACACCATCGCCGAGGCGCAGAAGACGGGCGGGGTCGCTGCGTTCGTCGATGC
CGAACACGCGCTCGATCCCGTTTACGCCAAGAAGCTGGGGGTCAATATCGACGAGCTGATCGTGTCGCAGCCGGATACCG
GCGAACAGGCGCTTGAGATCGTCGACACGCTGGTCCGGTCGAACGCGATCGACGTGCTGGTGGTCGACTCGGTCGCCGCG
CTGGTGCCGCGCGCGGAGATCGAGGGCGAGATGGGCGACAGCCATGTCGGACTTCAGGCGCGGCTGATGTCGCAGTCGCT
GCGCAAGCTGACCGGATCGATCAGCCGTTCGCGTTGCATGGTGATCTTCATCAATCAGCTGCGCATGAAGATCGGCGTGA
TGTACGGCAATCCCGAGACCACGACCGGCGGCAATGCGTTGAAATTCTACGCGTCGGTCCGGCTCGACATCCGCCGCACC
GGACAGATCAAGGACCGCGACGATATCATCGGCAATGCCACGCGCGTGAAGGTGGTGAAGAACAAGGTGGCGCCGCCGTT
CAAGCAAGTCGAATTCGACATCATGTATGGCGAGGGCGTTTCGAAGATCGGCGAGATTCTGGACCTGGGCGTCAAGGCCG
GGCTGGTCGAGAAGGCGGGCGCATGGTTCAGCTATGACAGCATCCGCATCGGCCAGGGGCGGGAGAACGCCAAGACCTTC
CTCAAGGAAAATCCGGACGTCTGCGCGCGACTGGAAGCGGCGATCCGTGGACGTACCGATCAGGTCGCCGAAGAGATGAT
GACGGGACCGGATGCCGAGGACGATCTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.568

94.944

0.632
  recA Vibrio cholerae strain A1552

67.164

94.101

0.632
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.164

94.101

0.632
  recA Neisseria gonorrhoeae MS11

69.136

91.011

0.629
  recA Neisseria gonorrhoeae MS11

69.136

91.011

0.629
  recA Neisseria gonorrhoeae strain FA1090

69.136

91.011

0.629
  recA Acinetobacter baylyi ADP1

65.497

96.067

0.629
  recA Glaesserella parasuis strain SC1401

68.827

91.011

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.706

95.506

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.564

91.573

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

67.5

89.888

0.607
  recA Acinetobacter baumannii D1279779

67.188

89.888

0.604
  recA Helicobacter pylori strain NCTC11637

63.05

95.787

0.604
  recA Helicobacter pylori 26695

62.757

95.787

0.601
  recA Ralstonia pseudosolanacearum GMI1000

69.156

86.517

0.598
  recA Latilactobacillus sakei subsp. sakei 23K

61.471

95.506

0.587
  recA Streptococcus pneumoniae TIGR4

57.91

99.438

0.576
  recA Streptococcus pneumoniae Rx1

57.91

99.438

0.576
  recA Streptococcus pneumoniae D39

57.91

99.438

0.576
  recA Streptococcus pneumoniae R6

57.91

99.438

0.576
  recA Streptococcus mitis SK321

62.037

91.011

0.565
  recA Streptococcus pyogenes NZ131

61.42

91.011

0.559
  recA Streptococcus mitis NCTC 12261

61.42

91.011

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

91.292

0.559
  recA Streptococcus mutans UA159

60.494

91.011

0.551
  recA Lactococcus lactis subsp. cremoris KW2

59.877

91.011

0.545

Multiple sequence alignment