Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FP435_RS02105 Genome accession   NZ_CP041987
Coordinates   339767..340819 (+) Length   350 a.a.
NCBI ID   WP_265484121.1    Uniprot ID   -
Organism   Lactobacillus sp. PV037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 334767..345819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP435_RS02080 (FP435_02080) - 334806..336020 (+) 1215 WP_265484117.1 M16 family metallopeptidase -
  FP435_RS02085 (FP435_02085) - 336017..337234 (+) 1218 WP_265484118.1 M16 family metallopeptidase -
  FP435_RS02090 (FP435_02090) ymfI 337257..337985 (+) 729 WP_265484624.1 elongation factor P 5-aminopentanone reductase -
  FP435_RS02095 (FP435_02095) - 338041..339024 (+) 984 WP_265484119.1 helix-turn-helix domain-containing protein -
  FP435_RS02100 (FP435_02100) pgsA 339027..339605 (+) 579 WP_265484120.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FP435_RS02105 (FP435_02105) recA 339767..340819 (+) 1053 WP_265484121.1 recombinase RecA Machinery gene
  FP435_RS02110 (FP435_02110) rny 340944..342587 (+) 1644 WP_265484122.1 ribonuclease Y -
  FP435_RS02115 (FP435_02115) - 342684..343832 (+) 1149 WP_265484124.1 glycosyltransferase family 4 protein -
  FP435_RS02120 (FP435_02120) - 343843..344505 (-) 663 WP_265484126.1 YigZ family protein -
  FP435_RS02125 (FP435_02125) - 344545..345819 (+) 1275 WP_416209747.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37801.90 Da        Isoelectric Point: 5.2119

>NTDB_id=375187 FP435_RS02105 WP_265484121.1 339767..340819(+) (recA) [Lactobacillus sp. PV037]
MAKDGKKSALEAALKKIEKDFGKGAVMRMGDKVDTQISTVPTGSLALDAALGVGGYPRGRIIEMYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYATALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGEMG
DSHVGLQARLMSQALRKLSGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRGEQIKQNSEAVGN
RTKIKVVKNKVAPPFRLAEVDIMYGQGISQTGELLDMAVEKDIINKAGAWYSYGDDRIGQGRENAKHYLEENPDVYAEVN
KLVRQAYGMEEENEETPQEKTKDEGNKKEN

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=375187 FP435_RS02105 WP_265484121.1 339767..340819(+) (recA) [Lactobacillus sp. PV037]
ATGGCTAAAGATGGTAAGAAATCAGCTTTAGAAGCTGCTTTGAAAAAGATTGAAAAGGACTTTGGTAAAGGTGCAGTAAT
GAGAATGGGTGATAAAGTAGATACCCAAATTTCTACTGTTCCTACTGGTTCATTAGCTTTAGATGCAGCGCTAGGTGTTG
GTGGATATCCACGTGGAAGAATCATTGAAATGTACGGACCAGAAAGTTCTGGTAAGACTACTGTGGCACTTCATGCAGTA
GCAGAGGTTCAAAAGCGTGGTGGCACAGCTGCTTATATTGATGCTGAAAATGCAATGGACCCTGCTTACGCTACTGCTTT
GGGAGTAGATATTGATTCATTAATTCTCTCCCAGCCAAATACTGGAGAAGAAGGTTTACAGATAGCGGATACTTTAATAG
CTAGTGGTGCAATTGATATTTTGGTAGTGGACTCTGTAGCTGCTTTGGTTCCACGTGCAGAAATTGATGGAGAAATGGGA
GATTCCCATGTTGGTTTACAAGCAAGATTAATGAGTCAAGCTTTACGTAAGTTATCTGGTAATATTTCTAAAACAAAAAC
AATTGCGATTTTTATTAATCAAATCCGTGAAAAAGTTGGAGTAATGTTTGGTAATCCAGAAACCACCCCAGGTGGACGTG
CTTTGAAGTTCTATTCAACGATTCGTTTGGAAGTTCGTCGAGGTGAACAAATTAAACAAAATAGCGAAGCCGTAGGTAAT
AGAACAAAAATTAAAGTAGTCAAAAATAAGGTGGCTCCTCCATTTAGACTAGCTGAAGTAGACATCATGTATGGGCAAGG
AATCTCTCAGACTGGTGAATTGCTTGATATGGCTGTTGAAAAAGACATTATCAATAAAGCGGGTGCTTGGTATTCTTACG
GAGATGACCGTATTGGACAAGGTAGAGAAAATGCTAAGCATTATCTTGAAGAGAATCCAGATGTTTATGCAGAAGTAAAC
AAACTTGTGCGCCAAGCGTATGGAATGGAAGAAGAGAACGAAGAAACACCTCAAGAAAAAACTAAAGATGAGGGAAATAA
GAAGGAAAACTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.701

95.714

0.763
  recA Streptococcus pneumoniae Rx1

67.143

100

0.671
  recA Streptococcus pneumoniae D39

67.143

100

0.671
  recA Streptococcus pneumoniae R6

67.143

100

0.671
  recA Streptococcus pneumoniae TIGR4

67.143

100

0.671
  recA Bacillus subtilis subsp. subtilis str. 168

71.385

92.857

0.663
  recA Streptococcus mitis SK321

67.638

98

0.663
  recA Streptococcus mitis NCTC 12261

67.347

98

0.66
  recA Streptococcus mutans UA159

65.714

100

0.657
  recA Streptococcus pyogenes NZ131

68.085

94

0.64
  recA Lactococcus lactis subsp. cremoris KW2

66.97

94.286

0.631
  recA Neisseria gonorrhoeae MS11

60.819

97.714

0.594
  recA Neisseria gonorrhoeae MS11

60.819

97.714

0.594
  recA Neisseria gonorrhoeae strain FA1090

60.819

97.714

0.594
  recA Acinetobacter baumannii D1279779

58.944

97.429

0.574
  recA Acinetobacter baylyi ADP1

58.651

97.429

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.366

93.714

0.566
  recA Ralstonia pseudosolanacearum GMI1000

58.631

96

0.563
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.451

93.714

0.557
  recA Helicobacter pylori strain NCTC11637

57.91

95.714

0.554
  recA Helicobacter pylori 26695

57.91

95.714

0.554
  recA Pseudomonas stutzeri DSM 10701

59.502

91.714

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.006

92

0.543
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.696

92

0.54
  recA Vibrio cholerae strain A1552

58.696

92

0.54
  recA Glaesserella parasuis strain SC1401

58.621

91.143

0.534

Multiple sequence alignment