Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FP432_RS03800 Genome accession   NZ_CP041982
Coordinates   747721..748791 (-) Length   356 a.a.
NCBI ID   WP_265489522.1    Uniprot ID   -
Organism   Lactobacillus sp. PV034     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 742721..753791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FP432_RS03785 (FP432_03760) - 744037..744699 (+) 663 WP_265489519.1 YigZ family protein -
  FP432_RS03790 (FP432_03765) - 744729..745844 (-) 1116 WP_265489520.1 glycosyltransferase family 4 protein -
  FP432_RS03795 (FP432_03770) rny 745966..747597 (-) 1632 WP_265489521.1 ribonuclease Y -
  FP432_RS03800 (FP432_03775) recA 747721..748791 (-) 1071 WP_265489522.1 recombinase RecA Machinery gene
  FP432_RS03805 (FP432_03780) pgsA 748955..749530 (-) 576 WP_265489523.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FP432_RS03810 (FP432_03785) - 749530..750648 (-) 1119 WP_265489524.1 helix-turn-helix domain-containing protein -
  FP432_RS03815 (FP432_03790) ymfI 750704..751432 (-) 729 WP_265489525.1 elongation factor P 5-aminopentanone reductase -
  FP432_RS03820 (FP432_03795) - 751429..752667 (-) 1239 WP_265489526.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38105.21 Da        Isoelectric Point: 5.2035

>NTDB_id=375160 FP432_RS03800 WP_265489522.1 747721..748791(-) (recA) [Lactobacillus sp. PV034]
MAKDEKQAALDAALKKIEKNFGKGAVMRMGAKADTQISTVPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLEIADTLISSGAIDIVVVDSVAALVPRAEIEGDMG
DSHVGLQARLMSQALRKLSGTISKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGTDVIGN
RVKLKVVKNKVAPPFKVAEVDIMYGHGVSQTGELIDMAADKDIINKAGSWYSYGDDRIGQGRENAKQYLADHPDVYDEVM
KKVRAAYGMDEDSVDQDSKAADEKDKASKAEKDKTE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=375160 FP432_RS03800 WP_265489522.1 747721..748791(-) (recA) [Lactobacillus sp. PV034]
TTGGCTAAAGATGAAAAACAAGCGGCTTTAGATGCTGCACTTAAAAAAATTGAAAAGAATTTTGGTAAGGGCGCAGTTAT
GCGAATGGGTGCAAAAGCTGATACGCAAATTTCTACTGTACCAAGTGGCTCTTTAGCGCTTGATGCTGCACTCGGGGTAG
GAGGTTATCCTCGCGGCAGAATTGTTGAAATTTATGGGCCTGAAAGTTCTGGTAAGACTACTGTGGCTTTACATGCAGTT
GCTGAAGTACAAAAACGTGGAGGAACTGCAGCATATATTGATGCAGAAAATGCGATGGATCCAGCTTATGCAGAAGCACT
AGGAGTTGATATTGATTCTTTAATTCTTTCACAACCTAACACAGGAGAAGAAGGATTAGAAATTGCTGATACTTTGATAT
CAAGTGGTGCAATTGATATTGTAGTTGTGGATTCAGTTGCTGCATTGGTTCCTCGAGCAGAAATTGAAGGAGATATGGGG
GATTCTCATGTCGGATTACAGGCTCGTCTAATGAGTCAAGCTTTAAGAAAATTATCTGGTACAATCTCTAAAACAAAAAC
TATTGCACTATTTATTAACCAAATACGTGAAAAAGTTGGTGTAATGTTTGGAAATCCAGAAACCACTCCAGGTGGACGGG
CTTTGAAATTTTACTCTACTATTCGTCTTGAAGTTAGAAGAGCAGAGCAAATTAAACAAGGAACGGATGTAATTGGTAAC
CGCGTTAAACTAAAAGTTGTAAAAAATAAAGTTGCACCTCCATTTAAAGTCGCAGAAGTTGATATTATGTATGGACATGG
AGTATCACAAACTGGTGAGCTAATTGATATGGCGGCTGATAAGGATATTATTAATAAAGCTGGATCATGGTATTCGTATG
GAGATGATCGTATTGGTCAAGGTAGAGAAAATGCTAAGCAGTATCTTGCAGATCATCCAGATGTATATGATGAAGTAATG
AAAAAGGTCAGAGCAGCTTATGGTATGGATGAAGATTCGGTTGATCAAGATAGTAAAGCTGCTGATGAAAAGGATAAGGC
GAGTAAAGCCGAAAAAGATAAAACAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

85.498

92.978

0.795
  recA Bacillus subtilis subsp. subtilis str. 168

72.727

92.697

0.674
  recA Streptococcus mutans UA159

66.667

99.438

0.663
  recA Streptococcus pneumoniae D39

66.289

99.157

0.657
  recA Streptococcus pneumoniae Rx1

66.289

99.157

0.657
  recA Streptococcus pneumoniae R6

66.289

99.157

0.657
  recA Streptococcus pneumoniae TIGR4

66.289

99.157

0.657
  recA Streptococcus pyogenes NZ131

70.821

92.416

0.654
  recA Streptococcus mitis NCTC 12261

65.812

98.596

0.649
  recA Streptococcus mitis SK321

65.527

98.596

0.646
  recA Lactococcus lactis subsp. cremoris KW2

66.667

93.539

0.624
  recA Neisseria gonorrhoeae strain FA1090

62.805

92.135

0.579
  recA Neisseria gonorrhoeae MS11

62.805

92.135

0.579
  recA Neisseria gonorrhoeae MS11

62.805

92.135

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

91.854

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.61

90.73

0.559
  recA Helicobacter pylori 26695

57.784

93.82

0.542
  recA Helicobacter pylori strain NCTC11637

57.784

93.82

0.542
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.537

92.135

0.539
  recA Acinetobacter baylyi ADP1

59.813

90.169

0.539
  recA Vibrio cholerae O1 biovar El Tor strain E7946

55.556

96.067

0.534
  recA Vibrio cholerae strain A1552

55.556

96.067

0.534
  recA Glaesserella parasuis strain SC1401

53.824

99.157

0.534
  recA Acinetobacter baumannii D1279779

58.567

90.169

0.528
  recA Ralstonia pseudosolanacearum GMI1000

59.744

87.921

0.525
  recA Pseudomonas stutzeri DSM 10701

56.832

90.449

0.514

Multiple sequence alignment