Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FPL17_RS07315 Genome accession   NZ_CP041970
Coordinates   1592570..1593616 (+) Length   348 a.a.
NCBI ID   WP_004807961.1    Uniprot ID   R9B9J0
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1587570..1598616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS07290 (FPL17_07375) - 1589070..1589486 (+) 417 WP_159884232.1 hypothetical protein -
  FPL17_RS07295 (FPL17_07380) - 1589635..1590366 (-) 732 WP_005189594.1 histidine phosphatase family protein -
  FPL17_RS07300 (FPL17_07385) - 1590418..1591275 (-) 858 WP_159884234.1 3'(2'),5'-bisphosphate nucleotidase CysQ family protein -
  FPL17_RS07305 (FPL17_07390) - 1591287..1591988 (+) 702 WP_159884236.1 HAD-IA family hydrolase -
  FPL17_RS07310 (FPL17_07395) - 1591972..1592400 (+) 429 WP_151715792.1 RNA-binding S4 domain-containing protein -
  FPL17_RS07315 (FPL17_07400) recA 1592570..1593616 (+) 1047 WP_004807961.1 recombinase RecA Machinery gene
  FPL17_RS07320 (FPL17_07405) - 1593659..1594141 (+) 483 WP_159884238.1 regulatory protein RecX -
  FPL17_RS07330 (FPL17_07415) - 1594573..1595427 (+) 855 WP_159884240.1 YbgF trimerization domain-containing protein -
  FPL17_RS07335 (FPL17_07420) - 1595490..1597361 (-) 1872 WP_159884242.1 SurA N-terminal domain-containing protein -
  FPL17_RS07340 (FPL17_07425) - 1597501..1597773 (-) 273 WP_004639426.1 HU family DNA-binding protein -
  FPL17_RS07345 (FPL17_07430) - 1597942..1598397 (-) 456 WP_005152136.1 phasin family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37911.46 Da        Isoelectric Point: 5.1637

>NTDB_id=375070 FPL17_RS07315 WP_004807961.1 1592570..1593616(+) (recA) [Acinetobacter dispersus strain NCCP 16014]
MDDNKSKALQAALGQIEKQFGKNTVMRLGDNTVLAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKNGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGDEITGNE
TRVKVVKNKMAPPFKEAVFQIMYGRGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPLMAQEIEK
IIREQLLTKNKNEAAQNEIEEEPDLLEI

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=375070 FPL17_RS07315 WP_004807961.1 1592570..1593616(+) (recA) [Acinetobacter dispersus strain NCCP 16014]
ATGGATGATAATAAAAGTAAAGCGCTACAAGCTGCCTTAGGTCAGATTGAAAAGCAATTTGGTAAAAATACCGTGATGCG
CTTAGGTGATAACACTGTTTTAGCAGTTGAAGCTGTTTCTACAGGTTCTCTAACATTAGATATCGCATTAGGGATTGGTG
GATTACCTAAGGGTCGTATTGTTGAAATTTATGGTCCAGAATCTTCAGGTAAAACCACCATGACATTGCAAGCGATCGCA
CAATGTCAGAAGAATGGCGGTACATGTGCATTTATCGATGCAGAACATGCTTTAGATCCTGAATATGCACGTAAACTCGG
TGTAGATATTGATAACCTATTGGTTTCACAACCCGACCATGGTGAACAAGCACTAGAAATTGCTGACATGTTGGTTCGCT
CAGGTGCAATTGACCTCATCGTTGTCGACTCCGTAGCTGCATTAACCCCGAAAGCTGAAATTGAAGGCGAAATGGGTGAT
TCACACATGGGCTTACAGGCTCGTTTGATGAGCCAGGCACTGCGTAAGATCACAGGTAATGCAAAACGCTCAAACTGTAT
GGTGATCTTCATTAACCAAATCCGTATGAAGATTGGTGTCATGTTTGGTAGCCCAGAAACAACAACGGGTGGTAATGCAC
TTAAATTCTATGCTTCTGTTCGTTTAGATATTCGTCGTATCGGTGCAGTAAAAGAAGGCGATGAAATCACAGGTAACGAA
ACACGCGTTAAAGTTGTTAAAAACAAAATGGCACCTCCGTTCAAAGAAGCGGTATTCCAAATCATGTATGGTCGAGGTAC
CAACCAGTTGGGTGAACTCGTTGATCTAGCCGTTCAACAAGATATCGTTCAAAAAGCAGGTGCTTGGTATTCATACCAAG
GTAATAAAATTGGGCAAGGTAAAAATAATGTGATTCGTCATTTTGAAGAGAATCCATTGATGGCTCAAGAAATTGAAAAA
ATCATTCGTGAACAGCTTCTCACCAAGAATAAAAATGAAGCAGCTCAAAATGAGATTGAAGAAGAACCAGATTTACTAGA
AATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R9B9J0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

91.908

99.425

0.914
  recA Acinetobacter baylyi ADP1

91.379

100

0.914
  recA Pseudomonas stutzeri DSM 10701

72.965

98.851

0.721
  recA Vibrio cholerae strain A1552

74.924

93.966

0.704
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.924

93.966

0.704
  recA Glaesserella parasuis strain SC1401

67.908

100

0.681
  recA Ralstonia pseudosolanacearum GMI1000

69.207

94.253

0.652
  recA Neisseria gonorrhoeae strain FA1090

69.444

93.103

0.647
  recA Neisseria gonorrhoeae MS11

69.444

93.103

0.647
  recA Neisseria gonorrhoeae MS11

69.444

93.103

0.647
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.072

95.977

0.615
  recA Helicobacter pylori strain NCTC11637

64.526

93.966

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

93.966

0.606
  recA Helicobacter pylori 26695

63.914

93.966

0.601
  recA Streptococcus mitis NCTC 12261

57.91

100

0.589
  recA Streptococcus mutans UA159

58.621

100

0.586
  recA Streptococcus pneumoniae Rx1

58.721

98.851

0.58
  recA Streptococcus pneumoniae TIGR4

58.721

98.851

0.58
  recA Streptococcus pneumoniae R6

58.721

98.851

0.58
  recA Streptococcus pneumoniae D39

58.721

98.851

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.81

90.517

0.578
  recA Streptococcus mitis SK321

58.944

97.989

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

61.801

92.529

0.572
  recA Streptococcus pyogenes NZ131

60.923

93.391

0.569
  recA Lactococcus lactis subsp. cremoris KW2

59.443

92.816

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

92.241

0.552

Multiple sequence alignment