Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DAAHT2_RS09660 Genome accession   NC_014216
Coordinates   2210363..2211463 (-) Length   366 a.a.
NCBI ID   WP_013164106.1    Uniprot ID   D6Z4V8
Organism   Desulfurivibrio alkaliphilus AHT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2205363..2216463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAAHT2_RS09640 (DaAHT2_1899) - 2205974..2206519 (-) 546 WP_013164102.1 F0F1 ATP synthase subunit delta -
  DAAHT2_RS09645 (DaAHT2_1900) - 2206516..2207091 (-) 576 WP_013164103.1 ATP synthase F0 subunit B -
  DAAHT2_RS09650 (DaAHT2_1901) - 2207093..2207518 (-) 426 WP_013164104.1 ATP synthase F0 subunit B -
  DAAHT2_RS09655 (DaAHT2_1902) alaS 2207686..2210325 (-) 2640 WP_013164105.1 alanine--tRNA ligase -
  DAAHT2_RS09660 (DaAHT2_1903) recA 2210363..2211463 (-) 1101 WP_013164106.1 recombinase RecA Machinery gene
  DAAHT2_RS09665 (DaAHT2_1904) - 2211456..2212730 (-) 1275 WP_013164107.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  DAAHT2_RS09670 (DaAHT2_1905) mtaB 2212730..2214142 (-) 1413 WP_013164108.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB -
  DAAHT2_RS09675 (DaAHT2_1906) - 2214473..2215018 (+) 546 WP_041718945.1 choice-of-anchor V domain-containing protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39280.82 Da        Isoelectric Point: 5.5721

>NTDB_id=37454 DAAHT2_RS09660 WP_013164106.1 2210363..2211463(-) (recA) [Desulfurivibrio alkaliphilus AHT]
MANVAADDKGNKSKTLDSAIFQIQKQFGKGSIMRLGADERVAVPAISTGILSLDIATGIGGIPRGRIIEVYGPESSGKTT
LALQIIASAQRQGGAVAFIDAEHALDVTYAERLGVNADDLLISQPDYGEQALEIAEILIRSGAVDVIVVDSVAALTPKAE
IDGNIGDTHVGLQARLMSQTMRKLAAILQRTNTAIIFINQIRMKIGVMFGNPETTTGGNALKFYSSMRIDIRRMTAIKDG
EEVIGNRVKAKLVKNKVAPPFKVAEFDIIFGEGSSREGDLLDLAVGQNIIDKSGAWYSYNGERIGQGRENSKQYLREHPE
LADEIERKVRLGFGLPMPGESREMPAEEAPGQEGATAKTGKAAKSE

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=37454 DAAHT2_RS09660 WP_013164106.1 2210363..2211463(-) (recA) [Desulfurivibrio alkaliphilus AHT]
ATGGCTAACGTGGCAGCGGACGACAAGGGCAACAAAAGCAAAACCCTGGACAGCGCCATTTTTCAGATTCAGAAGCAATT
CGGCAAAGGCTCCATCATGCGGTTGGGAGCCGACGAGCGGGTGGCGGTGCCGGCCATCTCCACCGGCATTTTGAGCCTGG
ATATCGCCACCGGCATCGGCGGTATCCCCCGTGGCCGGATCATCGAGGTATATGGGCCGGAATCCTCGGGCAAGACCACC
CTGGCCCTGCAGATCATCGCCTCGGCCCAGCGGCAGGGAGGCGCGGTGGCCTTTATCGACGCCGAACACGCCCTGGACGT
CACCTATGCCGAGCGGCTGGGGGTCAATGCCGACGACCTGCTGATCAGCCAGCCCGATTATGGCGAGCAGGCCCTGGAGA
TCGCCGAGATCCTGATCCGCAGCGGGGCGGTGGATGTCATCGTGGTGGACTCGGTGGCGGCCCTCACCCCCAAGGCGGAG
ATCGACGGCAACATCGGGGATACCCATGTGGGCCTGCAGGCCCGGCTGATGTCCCAGACCATGCGCAAACTGGCGGCGAT
TCTGCAGCGGACCAACACCGCCATTATCTTCATCAACCAGATCCGGATGAAGATCGGGGTGATGTTCGGCAACCCCGAGA
CCACCACCGGCGGCAACGCCTTGAAGTTTTACAGCTCCATGCGCATCGATATCCGCCGCATGACGGCGATCAAGGATGGG
GAAGAGGTGATCGGCAACCGGGTCAAGGCCAAGCTGGTGAAAAACAAGGTGGCTCCCCCCTTCAAGGTGGCCGAATTCGA
CATCATCTTCGGCGAGGGTTCCTCCCGGGAAGGCGATCTGCTGGATCTGGCGGTGGGGCAGAACATCATCGACAAGAGCG
GCGCCTGGTATTCCTATAACGGCGAGCGCATCGGCCAGGGCCGGGAGAACTCCAAGCAGTACCTGCGGGAACACCCCGAG
CTGGCCGATGAAATCGAGCGCAAGGTACGCTTGGGCTTCGGCCTGCCCATGCCCGGCGAGTCCCGCGAAATGCCGGCGGA
AGAGGCTCCCGGCCAGGAAGGAGCCACCGCCAAAACCGGCAAAGCGGCCAAAAGCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D6Z4V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

63.127

92.623

0.585
  recA Ralstonia pseudosolanacearum GMI1000

67.405

86.339

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.337

89.071

0.582
  recA Helicobacter pylori 26695

62.537

92.623

0.579
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.25

87.432

0.579
  recA Vibrio cholerae strain A1552

66.25

87.432

0.579
  recA Streptococcus mitis NCTC 12261

60.819

93.443

0.568
  recA Streptococcus pyogenes NZ131

63.303

89.344

0.566
  recA Streptococcus pneumoniae TIGR4

63.11

89.617

0.566
  recA Streptococcus pneumoniae R6

63.11

89.617

0.566
  recA Streptococcus pneumoniae Rx1

63.11

89.617

0.566
  recA Streptococcus pneumoniae D39

63.11

89.617

0.566
  recA Glaesserella parasuis strain SC1401

64.577

87.158

0.563
  recA Acinetobacter baumannii D1279779

64.375

87.432

0.563
  recA Acinetobacter baylyi ADP1

64.375

87.432

0.563
  recA Streptococcus mutans UA159

62.5

89.617

0.56
  recA Pseudomonas stutzeri DSM 10701

64.062

87.432

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

59.13

94.262

0.557
  recA Streptococcus mitis SK321

61.89

89.617

0.555
  recA Neisseria gonorrhoeae MS11

61.89

89.617

0.555
  recA Neisseria gonorrhoeae strain FA1090

61.89

89.617

0.555
  recA Neisseria gonorrhoeae MS11

61.89

89.617

0.555
  recA Bacillus subtilis subsp. subtilis str. 168

62.154

88.798

0.552
  recA Lactococcus lactis subsp. cremoris KW2

61.585

89.617

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.043

89.071

0.544
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

89.617

0.538

Multiple sequence alignment