Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M301_RS11025 Genome accession   NC_014207
Coordinates   2414438..2415466 (+) Length   342 a.a.
NCBI ID   WP_013148861.1    Uniprot ID   D7DL82
Organism   Methylotenera versatilis 301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2409438..2420466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M301_RS11005 (M301_2181) - 2409903..2411678 (-) 1776 WP_013148857.1 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase -
  M301_RS11010 (M301_2182) - 2411967..2412572 (-) 606 WP_013148858.1 YybH family protein -
  M301_RS11015 (M301_2183) - 2412635..2413561 (-) 927 WP_013148859.1 phosphatidate cytidylyltransferase -
  M301_RS11020 (M301_2184) - 2413551..2414174 (-) 624 WP_041360117.1 CDP-alcohol phosphatidyltransferase family protein -
  M301_RS11025 (M301_2185) recA 2414438..2415466 (+) 1029 WP_013148861.1 recombinase RecA Machinery gene
  M301_RS11030 (M301_2186) recX 2415498..2415962 (+) 465 WP_013148862.1 recombination regulator RecX -
  M301_RS11035 (M301_2187) alaS 2416010..2418715 (+) 2706 WP_013148863.1 alanine--tRNA ligase -
  M301_RS11040 (M301_2188) - 2418784..2420010 (+) 1227 WP_013148864.1 aspartate kinase -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36698.06 Da        Isoelectric Point: 5.5717

>NTDB_id=37394 M301_RS11025 WP_013148861.1 2414438..2415466(+) (recA) [Methylotenera versatilis 301]
MDDNKSKALSAALAQIEKQFGKGSIMRMGDGNIGEDIQAVSTGSLGLDIALGIGGLPRGRVIEIYGPESSGKTTLTLSVI
AQMQKSGGVAAFIDAEHALDPQYAAKLGVNVPDLLISQPDTGEQALEIVDMLVRSGSVDIVVIDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKLTGNIKRTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGS
ETRVKVIKNKVAPPFKQAEFDILYGEGISREGEIIELGANLKMVEKAGSWYSYNGEKIGQGKDNAREFLRSNPAIANEID
AKIRANMKSLSEAMPAVRSEED

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=37394 M301_RS11025 WP_013148861.1 2414438..2415466(+) (recA) [Methylotenera versatilis 301]
ATGGACGATAATAAAAGCAAAGCACTGAGCGCGGCACTTGCACAAATTGAAAAACAATTTGGTAAAGGCTCCATTATGCG
CATGGGCGACGGCAATATTGGTGAAGATATTCAAGCAGTTTCAACAGGTTCATTGGGCCTTGATATTGCCTTAGGCATTG
GCGGTTTACCACGCGGCCGTGTGATTGAAATTTACGGTCCAGAATCATCAGGTAAAACTACATTAACCCTTTCAGTGATT
GCACAAATGCAAAAATCTGGCGGTGTAGCAGCGTTTATCGATGCTGAGCATGCACTTGATCCACAATACGCTGCAAAGCT
AGGCGTAAACGTGCCAGATTTATTGATTTCACAGCCAGATACTGGTGAGCAAGCATTAGAAATCGTGGATATGTTAGTGC
GTTCAGGCTCAGTTGACATTGTAGTCATCGACTCTGTTGCAGCGCTTACACCACGTGCCGAAATTGAAGGCGAAATGGGC
GATTCACACATGGGTTTACAAGCGCGCTTAATGAGCCAAGCTTTGCGTAAACTCACAGGTAACATCAAACGTACCAACAC
CATGGTGATTTTCATTAACCAAATTCGTATGAAAATTGGCGTGATGTTTGGTAACCCAGAAACGACCACTGGTGGTAACG
CACTTAAATTCTACGCTTCTGTGCGTTTAGACATTCGCCGCACCGGCGCGATTAAAAAAGGTGACGAAGTCATTGGTTCA
GAAACACGCGTAAAAGTGATTAAAAACAAAGTCGCGCCACCGTTCAAACAAGCTGAATTTGATATTCTTTATGGCGAAGG
CATCTCACGTGAAGGCGAGATTATTGAGCTGGGCGCAAACCTGAAAATGGTTGAAAAAGCAGGTTCTTGGTATAGCTACA
ACGGTGAAAAAATCGGCCAAGGTAAAGACAATGCCCGCGAATTCCTAAGATCTAACCCAGCCATCGCTAATGAAATCGAC
GCAAAAATCCGCGCCAATATGAAGTCATTAAGCGAAGCAATGCCTGCGGTACGCTCTGAAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D7DL82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

72.807

100

0.728
  recA Ralstonia pseudosolanacearum GMI1000

78.846

91.228

0.719
  recA Neisseria gonorrhoeae MS11

75.077

95.029

0.713
  recA Neisseria gonorrhoeae MS11

75.077

95.029

0.713
  recA Neisseria gonorrhoeae strain FA1090

75.077

95.029

0.713
  recA Vibrio cholerae strain A1552

70.76

100

0.708
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.76

100

0.708
  recA Acinetobacter baylyi ADP1

70.175

100

0.702
  recA Acinetobacter baumannii D1279779

72.477

95.614

0.693
  recA Glaesserella parasuis strain SC1401

71.254

95.614

0.681
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.854

95.906

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

66.254

94.444

0.626
  recA Helicobacter pylori strain NCTC11637

63.393

98.246

0.623
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.964

97.368

0.623
  recA Helicobacter pylori 26695

62.798

98.246

0.617
  recA Streptococcus mitis SK321

60.526

100

0.605
  recA Streptococcus mutans UA159

61.677

97.661

0.602
  recA Streptococcus pyogenes NZ131

62.614

96.199

0.602
  recA Streptococcus mitis NCTC 12261

62.385

95.614

0.596
  recA Streptococcus pneumoniae D39

62.385

95.614

0.596
  recA Streptococcus pneumoniae R6

62.385

95.614

0.596
  recA Streptococcus pneumoniae TIGR4

62.385

95.614

0.596
  recA Streptococcus pneumoniae Rx1

62.385

95.614

0.596
  recA Latilactobacillus sakei subsp. sakei 23K

62.848

94.444

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

95.322

0.567
  recA Lactococcus lactis subsp. cremoris KW2

59.385

95.029

0.564

Multiple sequence alignment