Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | FE249_RS17645 | Genome accession | NZ_CP041716 |
| Coordinates | 3739747..3740787 (+) | Length | 346 a.a. |
| NCBI ID | WP_241418957.1 | Uniprot ID | - |
| Organism | Acidiphilium multivorum strain JZ-6 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3731160..3775641 | 3739747..3740787 | within | 0 |
Gene organization within MGE regions
Location: 3731160..3775641
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE249_RS17615 (FE249_17525) | - | 3731160..3731366 (+) | 207 | Protein_3464 | DNA recombination/repair protein RecA | - |
| FE249_RS17620 (FE249_17530) | - | 3731558..3732904 (+) | 1347 | WP_241418952.1 | tyrosine-type recombinase/integrase | - |
| FE249_RS17625 (FE249_17535) | - | 3732910..3736278 (+) | 3369 | WP_241418953.1 | VPA1269 family protein | - |
| FE249_RS17630 (FE249_17540) | - | 3736275..3736736 (+) | 462 | WP_241418954.1 | hypothetical protein | - |
| FE249_RS17635 (FE249_17545) | - | 3736733..3738895 (+) | 2163 | WP_241418955.1 | ATP-dependent DNA helicase | - |
| FE249_RS17640 (FE249_17550) | gmtX | 3738892..3739584 (+) | 693 | WP_241418956.1 | gamma-mobile-trio protein GmtX | - |
| FE249_RS17645 (FE249_17555) | recA | 3739747..3740787 (+) | 1041 | WP_241418957.1 | recombinase RecA | Machinery gene |
| FE249_RS17650 (FE249_17560) | - | 3741206..3741496 (+) | 291 | WP_241418958.1 | DUF1778 domain-containing protein | - |
| FE249_RS17655 (FE249_17565) | - | 3741493..3742002 (+) | 510 | WP_241418959.1 | GNAT family N-acetyltransferase | - |
| FE249_RS21435 | - | 3742131..3742274 (+) | 144 | Protein_3473 | helix-turn-helix domain-containing protein | - |
| FE249_RS17660 (FE249_17570) | - | 3742317..3742538 (-) | 222 | Protein_3474 | transposase | - |
| FE249_RS17665 (FE249_17575) | - | 3742578..3743801 (-) | 1224 | WP_241418960.1 | IS256 family transposase | - |
| FE249_RS17670 (FE249_17580) | - | 3743844..3744869 (-) | 1026 | Protein_3476 | IS256 family transposase | - |
| FE249_RS17675 | - | 3745079..3745237 (+) | 159 | WP_241418961.1 | hypothetical protein | - |
| FE249_RS17680 | - | 3745440..3745601 (+) | 162 | WP_241418962.1 | hypothetical protein | - |
| FE249_RS17685 | - | 3745582..3745761 (+) | 180 | WP_241418963.1 | hypothetical protein | - |
| FE249_RS17690 (FE249_17590) | - | 3746352..3747116 (+) | 765 | WP_241418964.1 | NYN domain-containing protein | - |
| FE249_RS17695 (FE249_17595) | - | 3747318..3749072 (+) | 1755 | WP_241418965.1 | caspase family protein | - |
| FE249_RS17705 (FE249_17600) | - | 3749540..3750124 (-) | 585 | Protein_3482 | IS256 family transposase | - |
| FE249_RS17710 (FE249_17605) | - | 3750304..3751983 (+) | 1680 | WP_241418966.1 | IS1634 family transposase | - |
| FE249_RS17715 (FE249_17610) | - | 3752083..3752214 (-) | 132 | Protein_3484 | transposase | - |
| FE249_RS17720 (FE249_17615) | - | 3752406..3753773 (+) | 1368 | WP_241418967.1 | IS5 family transposase | - |
| FE249_RS17725 (FE249_17620) | - | 3753922..3754206 (-) | 285 | WP_241418968.1 | hypothetical protein | - |
| FE249_RS21345 (FE249_17625) | - | 3754290..3754553 (+) | 264 | WP_338156906.1 | helix-turn-helix domain-containing protein | - |
| FE249_RS17730 (FE249_17630) | - | 3754858..3759141 (+) | 4284 | WP_241418969.1 | NACHT domain-containing protein | - |
| FE249_RS17735 (FE249_17635) | - | 3759439..3760695 (-) | 1257 | WP_241418970.1 | Y-family DNA polymerase | - |
| FE249_RS17740 (FE249_17640) | - | 3760699..3761076 (-) | 378 | WP_241418971.1 | LexA family protein | - |
| FE249_RS17745 (FE249_17645) | - | 3761644..3761919 (+) | 276 | WP_241418972.1 | hypothetical protein | - |
| FE249_RS17750 (FE249_17650) | - | 3762009..3763118 (+) | 1110 | WP_035189638.1 | IS110 family transposase | - |
| FE249_RS17755 (FE249_17655) | - | 3763485..3763859 (+) | 375 | WP_241418973.1 | hypothetical protein | - |
| FE249_RS21440 | - | 3764119..3764283 (-) | 165 | WP_414668556.1 | hypothetical protein | - |
| FE249_RS17765 (FE249_17660) | - | 3764461..3764676 (-) | 216 | WP_241418974.1 | hypothetical protein | - |
| FE249_RS17770 (FE249_17665) | - | 3764673..3764879 (-) | 207 | WP_241418975.1 | hypothetical protein | - |
| FE249_RS17775 (FE249_17670) | - | 3765112..3765318 (-) | 207 | WP_201727846.1 | cold-shock protein | - |
| FE249_RS17780 (FE249_17675) | - | 3765481..3766074 (-) | 594 | WP_241419826.1 | CarD family transcriptional regulator | - |
| FE249_RS17785 (FE249_17680) | - | 3767789..3769783 (-) | 1995 | WP_241418976.1 | recombinase family protein | - |
| FE249_RS17790 (FE249_17685) | - | 3769801..3770031 (-) | 231 | WP_241418977.1 | hypothetical protein | - |
| FE249_RS17795 (FE249_17690) | - | 3770162..3770494 (-) | 333 | WP_241418978.1 | XRE family transcriptional regulator | - |
| FE249_RS17800 (FE249_17695) | - | 3770478..3770849 (-) | 372 | WP_241418979.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FE249_RS17805 (FE249_17700) | - | 3771101..3772909 (-) | 1809 | WP_241418980.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| FE249_RS17810 | - | 3773018..3773173 (+) | 156 | WP_241418981.1 | hypothetical protein | - |
| FE249_RS17815 (FE249_17705) | istA | 3773336..3774877 (+) | 1542 | WP_011930854.1 | IS21 family transposase | - |
| FE249_RS17820 (FE249_17710) | istB | 3774889..3775641 (+) | 753 | WP_241418982.1 | IS21-like element helper ATPase IstB | - |
Sequence
Protein
Download Length: 346 a.a. Molecular weight: 37133.53 Da Isoelectric Point: 6.6482
>NTDB_id=373371 FE249_RS17645 WP_241418957.1 3739747..3740787(+) (recA) [Acidiphilium multivorum strain JZ-6]
MNERAKTSASDKTKALDAALAQIERAFGKGSIMKLGDKPHETIPAISTGSISLDIALGIGGMPRGRICEIFGPESSGKST
VATTIVAEAQKIGGSCAYIDSEHAFDPTYAQKLGVKIEDLILSQPDTGEQALEIADTLVRSGAIDVVVIDSVAALVPRAE
LEGEMGDSHVGLHARLMSQSLRKLTGTISKSNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASIRLDIRRIGAIKDK
DEVVGNQTRVKVVKNKVAPPFKVCEFDIMYGEGISKTGELIDLGVKTNIVEKSGSWFSYNSQRIGQGRENAKQFLKDNPK
IAEEIEAQIRANAGVVEHSMIGDPES
MNERAKTSASDKTKALDAALAQIERAFGKGSIMKLGDKPHETIPAISTGSISLDIALGIGGMPRGRICEIFGPESSGKST
VATTIVAEAQKIGGSCAYIDSEHAFDPTYAQKLGVKIEDLILSQPDTGEQALEIADTLVRSGAIDVVVIDSVAALVPRAE
LEGEMGDSHVGLHARLMSQSLRKLTGTISKSNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASIRLDIRRIGAIKDK
DEVVGNQTRVKVVKNKVAPPFKVCEFDIMYGEGISKTGELIDLGVKTNIVEKSGSWFSYNSQRIGQGRENAKQFLKDNPK
IAEEIEAQIRANAGVVEHSMIGDPES
Nucleotide
Download Length: 1041 bp
>NTDB_id=373371 FE249_RS17645 WP_241418957.1 3739747..3740787(+) (recA) [Acidiphilium multivorum strain JZ-6]
ATGAATGAACGAGCCAAAACTTCCGCAAGCGACAAAACAAAGGCCCTAGACGCAGCACTGGCGCAAATTGAACGCGCCTT
TGGCAAGGGATCGATCATGAAGCTTGGAGACAAGCCACATGAGACGATTCCCGCTATCTCTACAGGCTCAATATCGTTAG
ATATTGCGCTAGGTATTGGCGGCATGCCGCGAGGTAGAATTTGTGAAATTTTTGGACCTGAGTCTAGTGGCAAGAGTACT
GTCGCGACAACTATTGTAGCAGAAGCGCAAAAAATTGGTGGTTCATGCGCTTATATTGATTCCGAACATGCATTTGATCC
AACTTACGCACAAAAGCTTGGCGTCAAAATTGAAGATCTAATATTATCGCAGCCAGATACTGGTGAGCAGGCTCTTGAAA
TAGCTGACACATTGGTTCGCTCTGGGGCGATTGATGTCGTTGTGATCGATTCGGTCGCCGCTCTTGTTCCTCGCGCCGAA
CTTGAGGGCGAGATGGGTGACAGCCATGTCGGCCTTCACGCCAGGCTGATGTCTCAATCGCTGCGGAAGCTCACCGGCAC
CATTTCTAAATCGAACTGTCTCGTCATTTTCATCAACCAGATCCGTATGAAAATCGGTGTCATGTTCGGCAATCCCGAGA
CCACGACTGGCGGCAATGCGCTAAAGTTCTACGCGTCGATCCGCCTGGATATCCGTCGGATCGGCGCAATCAAAGATAAA
GACGAGGTCGTCGGAAACCAGACCAGAGTGAAAGTTGTGAAGAATAAGGTGGCTCCTCCATTCAAAGTTTGCGAGTTCGA
CATCATGTATGGGGAAGGCATTTCGAAAACTGGCGAGCTAATCGATCTCGGAGTGAAGACTAATATCGTCGAGAAATCCG
GCTCTTGGTTCTCCTATAATTCCCAACGTATCGGCCAAGGCCGTGAAAACGCCAAGCAATTCCTAAAGGATAATCCCAAG
ATCGCCGAGGAAATTGAGGCGCAAATCCGCGCCAACGCAGGCGTTGTCGAACACTCAATGATTGGCGACCCAGAGAGTTA
G
ATGAATGAACGAGCCAAAACTTCCGCAAGCGACAAAACAAAGGCCCTAGACGCAGCACTGGCGCAAATTGAACGCGCCTT
TGGCAAGGGATCGATCATGAAGCTTGGAGACAAGCCACATGAGACGATTCCCGCTATCTCTACAGGCTCAATATCGTTAG
ATATTGCGCTAGGTATTGGCGGCATGCCGCGAGGTAGAATTTGTGAAATTTTTGGACCTGAGTCTAGTGGCAAGAGTACT
GTCGCGACAACTATTGTAGCAGAAGCGCAAAAAATTGGTGGTTCATGCGCTTATATTGATTCCGAACATGCATTTGATCC
AACTTACGCACAAAAGCTTGGCGTCAAAATTGAAGATCTAATATTATCGCAGCCAGATACTGGTGAGCAGGCTCTTGAAA
TAGCTGACACATTGGTTCGCTCTGGGGCGATTGATGTCGTTGTGATCGATTCGGTCGCCGCTCTTGTTCCTCGCGCCGAA
CTTGAGGGCGAGATGGGTGACAGCCATGTCGGCCTTCACGCCAGGCTGATGTCTCAATCGCTGCGGAAGCTCACCGGCAC
CATTTCTAAATCGAACTGTCTCGTCATTTTCATCAACCAGATCCGTATGAAAATCGGTGTCATGTTCGGCAATCCCGAGA
CCACGACTGGCGGCAATGCGCTAAAGTTCTACGCGTCGATCCGCCTGGATATCCGTCGGATCGGCGCAATCAAAGATAAA
GACGAGGTCGTCGGAAACCAGACCAGAGTGAAAGTTGTGAAGAATAAGGTGGCTCCTCCATTCAAAGTTTGCGAGTTCGA
CATCATGTATGGGGAAGGCATTTCGAAAACTGGCGAGCTAATCGATCTCGGAGTGAAGACTAATATCGTCGAGAAATCCG
GCTCTTGGTTCTCCTATAATTCCCAACGTATCGGCCAAGGCCGTGAAAACGCCAAGCAATTCCTAAAGGATAATCCCAAG
ATCGCCGAGGAAATTGAGGCGCAAATCCGCGCCAACGCAGGCGTTGTCGAACACTCAATGATTGGCGACCCAGAGAGTTA
G
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.