Detailed information NTG0372680

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: FNC98_RS04400
• Genome accession: NZ_CP041638
• Coordinates: 1008585..1009616 (+)
• Length: 343 a.a.
• NCBI ID: WP_313904127.1
• Uniprot ID: -
• Organism: Thalassotalea sp. PS06
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1008275..1025909	1008585..1009616	within	0

Gene organization within MGE regions

Location: 1008275..1025909

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNC98_RS04395 (FNC98_04395)	recA	1008275..1008463 (+)	189	Protein_857	recombinase RecA	-
FNC98_RS04400 (FNC98_04400)	recA	1008585..1009616 (+)	1032	WP_313904127.1	recombinase RecA	Machinery gene
FNC98_RS04405 (FNC98_04405)	-	1009638..1011653 (+)	2016	WP_143580123.1	hypothetical protein	-
FNC98_RS16765	-	1011653..1013905 (+)	2253	WP_185968056.1	hypothetical protein	-
FNC98_RS04415 (FNC98_04415)	-	1013909..1014379 (+)	471	WP_143580124.1	hypothetical protein	-
FNC98_RS04420 (FNC98_04420)	-	1014379..1015587 (+)	1209	WP_143580125.1	site-specific integrase	-
FNC98_RS04425 (FNC98_04425)	-	1016432..1016734 (+)	303	WP_143580126.1	hypothetical protein	-
FNC98_RS04430 (FNC98_04430)	-	1016835..1017251 (+)	417	WP_143580127.1	hypothetical protein	-
FNC98_RS04435 (FNC98_04435)	-	1017514..1017939 (+)	426	WP_143580128.1	hypothetical protein	-
FNC98_RS04440 (FNC98_04440)	-	1018055..1018984 (+)	930	WP_143580129.1	hypothetical protein	-
FNC98_RS04445 (FNC98_04445)	-	1019515..1020099 (-)	585	WP_143580130.1	recombinase family protein	-
FNC98_RS04450 (FNC98_04450)	-	1020229..1020516 (-)	288	WP_143580131.1	hypothetical protein	-
FNC98_RS04455 (FNC98_04455)	-	1020704..1021444 (-)	741	WP_143580132.1	ATP-dependent RecD-like DNA helicase	-
FNC98_RS04460 (FNC98_04460)	-	1021632..1023779 (-)	2148	WP_260680467.1	ATP-dependent RecD-like DNA helicase	-
FNC98_RS04465 (FNC98_04465)	-	1023851..1024306 (-)	456	WP_185968057.1	VPA1267 family protein	-
FNC98_RS04470 (FNC98_04470)	-	1024310..1024873 (-)	564	WP_185968058.1	recombinase family protein	-
FNC98_RS04475 (FNC98_04475)	recA	1025067..1025909 (+)	843	Protein_873	recombinase RecA	-

Sequence

Protein

• Length: 343 a.a.
• Molecular weight: 37077.56 Da
• Isoelectric Point: 5.1738

>NTDB_id=372680 FNC98_RS04400 WP_313904127.1 1008585..1009616(+) (recA) [Thalassotalea sp. PS06]
MTMENKKEAALASALSQIERQFGKGSIMKMGDQNALAVDTISTGSLTLDVALGVGGLPRGRIVEVYGPESAGKSTLCLQV
VAEAQKKGLVAAFIDAEHALDPIYAQKLGVSLDELLISQPDTGEQALEIADMLVRSGSVDLIIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGNVKQTNCMMMFVNQIRMKIGVMFGNPETTTGGNALKFYSSVRMDIRRTGAVKEGDEVVG
NETRVKVVKNKVAPPFKQAEFQIRYGQGVDKLAELIDLGVQNKLIEKAGAWYSCNGERIGQGKANATKYLHENSELAEEL
EVKLRDILLPKTTKSEDESQTSE

Nucleotide

• Length: 1032 bp

>NTDB_id=372680 FNC98_RS04400 WP_313904127.1 1008585..1009616(+) (recA) [Thalassotalea sp. PS06]
ATTACGATGGAAAATAAAAAAGAAGCAGCATTAGCATCAGCACTTAGTCAAATTGAGCGTCAGTTCGGTAAAGGCTCGAT
AATGAAGATGGGCGACCAAAACGCATTGGCTGTAGATACCATTTCTACTGGCTCTTTGACACTTGATGTCGCACTTGGTG
TCGGGGGATTGCCGCGAGGCAGAATAGTAGAGGTATATGGCCCAGAAAGTGCCGGTAAGTCCACACTTTGTTTACAGGTG
GTAGCAGAAGCTCAAAAGAAAGGATTAGTAGCTGCATTTATTGATGCTGAACACGCACTTGATCCAATCTATGCGCAAAA
ACTTGGTGTTAGCCTTGATGAACTTTTAATTTCACAGCCTGATACAGGCGAGCAAGCGTTAGAAATTGCAGATATGCTTG
TACGATCCGGATCCGTAGATCTTATTATTGTTGACTCTGTAGCTGCTCTTACTCCTAAGGCTGAAATTGAGGGGGAAATG
GGTGATTCGCACATGGGCTTACAAGCACGCCTCATGTCTCAGGCTCTTCGAAAGTTAACCGGTAACGTTAAGCAAACCAA
TTGTATGATGATGTTTGTTAACCAGATCCGTATGAAGATCGGGGTCATGTTTGGTAACCCTGAAACGACCACGGGTGGTA
ATGCTCTGAAATTCTACTCGTCTGTACGTATGGACATTCGTCGCACTGGTGCGGTTAAAGAAGGAGACGAGGTAGTGGGT
AATGAGACTCGCGTCAAAGTTGTTAAAAACAAAGTTGCACCGCCTTTTAAGCAAGCTGAATTCCAAATCAGATATGGTCA
AGGTGTTGATAAGCTTGCCGAACTGATTGACCTGGGTGTTCAGAACAAATTAATTGAAAAAGCAGGTGCTTGGTATAGCT
GTAATGGGGAGCGTATTGGCCAGGGCAAAGCTAATGCCACTAAATACTTGCATGAAAACTCAGAATTAGCTGAAGAACTT
GAAGTTAAACTTCGAGACATCCTTCTGCCTAAAACGACAAAGTCAGAAGATGAATCTCAGACATCTGAATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (10-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae O1 biovar El Tor strain E7946	73.7	95.335	0.703
recA	Vibrio cholerae strain A1552	73.7	95.335	0.703
recA	Ralstonia pseudosolanacearum GMI1000	71.642	97.668	0.7
recA	Pseudomonas stutzeri DSM 10701	72.477	95.335	0.691
recA	Acinetobacter baumannii D1279779	68.421	99.708	0.682
recA	Acinetobacter baylyi ADP1	68.328	99.417	0.679
recA	Glaesserella parasuis strain SC1401	65.896	100	0.665
recA	Neisseria gonorrhoeae strain FA1090	69.444	94.461	0.656
recA	Neisseria gonorrhoeae MS11	69.444	94.461	0.656
recA	Neisseria gonorrhoeae MS11	69.444	94.461	0.656
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.36	97.085	0.586
recA	Bacillus subtilis subsp. subtilis str. 168	62.187	93.294	0.58
recA	Latilactobacillus sakei subsp. sakei 23K	60.87	93.878	0.571
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	60	93.294	0.56
recA	Streptococcus pneumoniae R6	58.642	94.461	0.554
recA	Streptococcus pneumoniae Rx1	58.642	94.461	0.554
recA	Streptococcus pneumoniae D39	58.642	94.461	0.554
recA	Streptococcus pneumoniae TIGR4	58.642	94.461	0.554
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.248	93.003	0.551
recA	Streptococcus mitis SK321	58.333	94.461	0.551
recA	Streptococcus mitis NCTC 12261	58.333	94.461	0.551
recA	Helicobacter pylori strain NCTC11637	57.492	95.335	0.548
recA	Helicobacter pylori 26695	57.187	95.335	0.545
recA	Streptococcus mutans UA159	57.231	94.752	0.542
recA	Streptococcus pyogenes NZ131	56.923	94.752	0.539
recA	Lactococcus lactis subsp. cremoris KW2	55.247	94.461	0.522