Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ARNIT_RS14860 Genome accession   NC_014166
Coordinates   2978880..2979920 (+) Length   346 a.a.
NCBI ID   WP_013136748.1    Uniprot ID   D5V7I3
Organism   Arcobacter nitrofigilis DSM 7299     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2973880..2984920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ARNIT_RS14835 (Arnit_2950) pseI 2974585..2975610 (-) 1026 WP_013136743.1 pseudaminic acid synthase -
  ARNIT_RS14840 (Arnit_2951) pseF 2975642..2976355 (-) 714 WP_013136744.1 pseudaminic acid cytidylyltransferase -
  ARNIT_RS14845 (Arnit_2952) pseC 2976348..2977478 (-) 1131 WP_013136745.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase -
  ARNIT_RS14850 (Arnit_2953) pseB 2977485..2978477 (-) 993 WP_013136746.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  ARNIT_RS14855 (Arnit_2954) - 2978582..2978794 (+) 213 WP_013136747.1 hypothetical protein -
  ARNIT_RS14860 (Arnit_2955) recA 2978880..2979920 (+) 1041 WP_013136748.1 recombinase RecA Machinery gene
  ARNIT_RS14865 (Arnit_2956) eno 2980072..2981346 (+) 1275 WP_013136749.1 phosphopyruvate hydratase -
  ARNIT_RS14870 (Arnit_2957) - 2981359..2981616 (+) 258 WP_013136750.1 septum formation initiator -
  ARNIT_RS14875 (Arnit_2958) - 2981613..2982419 (+) 807 WP_013136751.1 AMIN domain-containing protein -
  ARNIT_RS14880 (Arnit_2959) - 2982393..2983550 (-) 1158 WP_013136752.1 cation:proton antiporter -
  ARNIT_RS14885 (Arnit_2960) - 2983564..2984424 (-) 861 WP_013136753.1 biotin synthase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37450.83 Da        Isoelectric Point: 4.6964

>NTDB_id=37266 ARNIT_RS14860 WP_013136748.1 2978880..2979920(+) (recA) [Arcobacter nitrofigilis DSM 7299]
MDDNQKKSLELAIKQIDKAFGKGSLVRLGDKETVPVESISTGSLGLDLALGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
ECQRQGGVCAFIDAEHALDVIYAKNLGVDTDNLLVSQPDFGEQALEILETVIRSGAVDLIVIDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKITGILHKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSIRLDIRRIATLKQAENSIGN
RVKVKVVKNKVAPPFKQAEFDIMFGEGISKMGELVDYGVKLDIVDKAGAWFSYNDSKIGQGKENSKVFLRENPEIAKEIE
DKILEAMGVNDAVPFDGDESSEEGED

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=37266 ARNIT_RS14860 WP_013136748.1 2978880..2979920(+) (recA) [Arcobacter nitrofigilis DSM 7299]
ATGGATGATAATCAAAAAAAATCACTAGAATTAGCAATTAAACAAATTGACAAGGCTTTTGGAAAAGGTTCACTTGTAAG
ATTAGGGGATAAAGAAACCGTTCCAGTTGAGTCTATAAGTACAGGTTCATTGGGACTTGACTTAGCATTAGGGGTTGGAG
GATTACCAAAGGGAAGAGTAATAGAAATATATGGTCCTGAATCTTCAGGTAAAACTACACTTACACTTCATGCAATAGCT
GAGTGCCAAAGACAAGGTGGAGTTTGTGCCTTTATTGATGCAGAACATGCACTTGATGTTATTTATGCAAAAAACTTAGG
TGTTGATACAGATAACTTACTTGTTTCACAACCAGATTTTGGAGAGCAAGCTTTAGAAATACTAGAGACTGTTATTAGAA
GTGGGGCTGTTGATTTAATAGTAATTGACTCAGTTGCAGCACTTACTCCAAAAGTAGAGATTGATGGTGATATGGATGAC
CAACAAGTTGGTGTTCAAGCTAGACTTATGAGTAAGGCTCTAAGAAAAATAACTGGGATCTTACATAAAATGAATTGTAC
TGTAATCTTTATCAACCAAATCAGAATGAAAATTGGTATGACAGGATATGGAAGTCCAGAAACTACAACAGGTGGAAATG
CACTTAAATTTTACTCTTCTATTAGACTTGATATTAGAAGAATTGCAACACTTAAACAAGCTGAAAACTCTATTGGAAAT
AGAGTAAAAGTAAAAGTTGTAAAAAATAAAGTTGCACCTCCTTTCAAACAAGCAGAATTTGATATCATGTTTGGAGAAGG
TATCTCAAAAATGGGAGAACTTGTTGATTATGGTGTTAAACTTGATATTGTCGATAAAGCTGGAGCTTGGTTTAGCTACA
ATGATAGTAAAATAGGACAAGGAAAAGAGAATTCAAAAGTATTCTTAAGAGAAAATCCAGAAATAGCAAAAGAGATTGAA
GATAAAATTCTTGAAGCTATGGGTGTAAATGATGCTGTGCCATTTGATGGTGATGAAAGTTCAGAAGAAGGTGAAGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5V7I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.51

99.133

0.749
  recA Helicobacter pylori 26695

74.783

99.711

0.746
  recA Helicobacter pylori strain NCTC11637

74.493

99.711

0.743
  recA Acinetobacter baumannii D1279779

64.327

98.844

0.636
  recA Neisseria gonorrhoeae MS11

62.139

100

0.621
  recA Neisseria gonorrhoeae MS11

62.139

100

0.621
  recA Neisseria gonorrhoeae strain FA1090

62.139

100

0.621
  recA Acinetobacter baylyi ADP1

65.749

94.509

0.621
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.763

96.243

0.604
  recA Pseudomonas stutzeri DSM 10701

62.952

95.954

0.604
  recA Ralstonia pseudosolanacearum GMI1000

66.032

91.04

0.601
  recA Vibrio cholerae strain A1552

62.997

94.509

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.997

94.509

0.595
  recA Glaesserella parasuis strain SC1401

62.5

94.798

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

60.121

95.665

0.575
  recA Streptococcus pneumoniae TIGR4

57.143

99.133

0.566
  recA Streptococcus pneumoniae Rx1

57.143

99.133

0.566
  recA Streptococcus pneumoniae D39

57.143

99.133

0.566
  recA Streptococcus pneumoniae R6

57.143

99.133

0.566
  recA Streptococcus mutans UA159

56.196

100

0.564
  recA Streptococcus mitis NCTC 12261

56.358

100

0.564
  recA Streptococcus mitis SK321

56.069

100

0.561
  recA Lactococcus lactis subsp. cremoris KW2

58.055

95.087

0.552
  recA Streptococcus pyogenes NZ131

58.462

93.931

0.549
  recA Latilactobacillus sakei subsp. sakei 23K

56.325

95.954

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.407

93.642

0.538

Multiple sequence alignment