Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FNV33_RS03405 Genome accession   NZ_CP041626
Coordinates   714973..716082 (+) Length   369 a.a.
NCBI ID   WP_143333270.1    Uniprot ID   A0A516GHZ1
Organism   Dolosigranulum pigrum strain 83VPs-KB5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 709973..721082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV33_RS03385 (FNV33_03385) yfmH 710857..712149 (+) 1293 WP_143333268.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  FNV33_RS03390 (FNV33_03390) - 712187..713029 (+) 843 WP_112779446.1 RodZ family helix-turn-helix domain-containing protein -
  FNV33_RS03395 (FNV33_03395) pgsA 713039..713617 (+) 579 WP_111949380.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FNV33_RS03400 (FNV33_03400) - 713711..714892 (+) 1182 WP_143333269.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  FNV33_RS03405 (FNV33_03405) recA 714973..716082 (+) 1110 WP_143333270.1 recombinase RecA Machinery gene
  FNV33_RS03410 (FNV33_03410) rny 716398..717960 (+) 1563 WP_111949278.1 ribonuclease Y -
  FNV33_RS03415 (FNV33_03415) - 718027..718575 (-) 549 WP_143333271.1 hypothetical protein -
  FNV33_RS03420 (FNV33_03420) - 718687..719214 (-) 528 WP_143333272.1 transcription repressor NadR -
  FNV33_RS03425 (FNV33_03425) - 719360..720010 (+) 651 WP_143333273.1 hypothetical protein -
  FNV33_RS03430 (FNV33_03430) secG 720077..720307 (+) 231 WP_004636629.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40113.46 Da        Isoelectric Point: 4.5533

>NTDB_id=372542 FNV33_RS03405 WP_143333270.1 714973..716082(+) (recA) [Dolosigranulum pigrum strain 83VPs-KB5]
MVSEERQKALDKALKNIEKNFGKGSIMKMGEKVDTEVRSVPSGSLALDVALGIGGYPRGRIIEVYGPESSGKTTVALHAI
AAVQEEGGVAAFIDAEHALDPKYARALGVDVDELLLSQPDTGEQALEITDALVASGAIDIIVVDSVAALVPRAEIDGEMG
DAHVGLQARLMSQALRKLSGSINKTKTICMFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEKIKSGSDLTGN
RTKIKIVKNKVAPPFKTAMVDIMYGQGISQVGELVDMGADADVITKAGAWYSYGEERLGQGRENAKEFLEENLEIRKEID
RKVRLAYGVIDEEEFERLQQLAAERAEQASELEVDEEIEETENNTSADE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=372542 FNV33_RS03405 WP_143333270.1 714973..716082(+) (recA) [Dolosigranulum pigrum strain 83VPs-KB5]
ATGGTATCAGAGGAACGTCAGAAAGCGCTAGATAAAGCATTGAAAAATATTGAGAAGAATTTCGGTAAAGGATCCATTAT
GAAAATGGGTGAGAAAGTCGATACGGAGGTGCGTTCAGTTCCAAGTGGGTCATTGGCACTAGATGTTGCACTGGGTATTG
GTGGCTATCCACGAGGGCGTATTATTGAAGTATATGGACCAGAAAGTTCTGGTAAGACCACTGTAGCGCTACATGCAATT
GCAGCTGTACAAGAAGAAGGTGGGGTAGCGGCCTTCATCGATGCTGAGCACGCCTTGGATCCAAAATATGCTCGAGCACT
TGGTGTCGATGTGGATGAATTATTACTTTCACAGCCAGATACTGGAGAGCAAGCATTAGAAATTACAGATGCCTTAGTAG
CTAGTGGGGCGATTGATATTATTGTTGTTGACTCAGTTGCGGCACTTGTTCCACGCGCTGAGATTGATGGTGAGATGGGG
GATGCTCATGTAGGATTGCAAGCGCGTCTGATGTCACAAGCGTTGCGTAAGCTATCTGGTTCAATTAATAAAACAAAGAC
AATTTGTATGTTCATCAATCAGATTCGCGAAAAAATTGGTGTTATGTTCGGAAATCCTGAGACAACACCAGGTGGGCGCG
CTTTGAAATTTTACTCATCAGTTCGTTTAGAAGTTCGTCGAGCTGAAAAAATTAAATCAGGTTCTGATCTAACCGGTAAC
CGAACTAAAATTAAAATTGTCAAAAATAAGGTAGCCCCACCATTTAAGACAGCAATGGTTGATATTATGTATGGACAAGG
TATCTCGCAAGTTGGTGAGCTCGTCGATATGGGAGCCGATGCTGATGTGATTACTAAAGCAGGTGCATGGTATTCTTATG
GGGAAGAACGTCTTGGTCAAGGACGTGAGAATGCAAAAGAGTTCTTAGAAGAAAACCTTGAGATCAGAAAAGAGATTGAT
CGTAAGGTACGGTTAGCTTATGGCGTAATTGATGAAGAAGAGTTTGAGCGACTGCAACAATTGGCAGCAGAGAGAGCAGA
ACAAGCTTCAGAACTCGAAGTAGATGAAGAAATTGAAGAGACGGAAAACAATACGTCAGCTGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516GHZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.347

90.515

0.691
  recA Bacillus subtilis subsp. subtilis str. 168

76.923

88.076

0.678
  recA Streptococcus pneumoniae Rx1

66.76

97.019

0.648
  recA Streptococcus pneumoniae D39

66.76

97.019

0.648
  recA Streptococcus pneumoniae R6

66.76

97.019

0.648
  recA Streptococcus pneumoniae TIGR4

66.76

97.019

0.648
  recA Streptococcus mutans UA159

65.659

98.645

0.648
  recA Streptococcus mitis NCTC 12261

66.295

97.29

0.645
  recA Streptococcus pyogenes NZ131

65.833

97.561

0.642
  recA Streptococcus mitis SK321

69.461

90.515

0.629
  recA Lactococcus lactis subsp. cremoris KW2

65.868

90.515

0.596
  recA Neisseria gonorrhoeae strain FA1090

63.83

89.16

0.569
  recA Neisseria gonorrhoeae MS11

63.83

89.16

0.569
  recA Neisseria gonorrhoeae MS11

63.83

89.16

0.569
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.496

97.29

0.569
  recA Vibrio cholerae strain A1552

58.496

97.29

0.569
  recA Ralstonia pseudosolanacearum GMI1000

65.815

84.824

0.558
  recA Acinetobacter baumannii D1279779

61.92

87.534

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

88.076

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

88.889

0.534
  recA Pseudomonas stutzeri DSM 10701

60.681

87.534

0.531
  recA Acinetobacter baylyi ADP1

60.681

87.534

0.531
  recA Glaesserella parasuis strain SC1401

61.059

86.992

0.531
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.574

89.16

0.531
  recA Helicobacter pylori 26695

59.146

88.889

0.526
  recA Helicobacter pylori strain NCTC11637

58.841

88.889

0.523

Multiple sequence alignment