Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   THERJR_RS06470 Genome accession   NC_014152
Coordinates   1350312..1351343 (+) Length   343 a.a.
NCBI ID   WP_013120157.1    Uniprot ID   D5XER8
Organism   Thermincola potens JR     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1345312..1356343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THERJR_RS06445 (TherJR_1271) - 1346428..1347753 (-) 1326 WP_013119932.1 ISNCY family transposase -
  THERJR_RS06450 (TherJR_1273) - 1348039..1348227 (+) 189 WP_013120153.1 hypothetical protein -
  THERJR_RS06455 (TherJR_1274) - 1348529..1349434 (+) 906 WP_157723945.1 CorA family divalent cation transporter -
  THERJR_RS06460 (TherJR_1275) - 1349593..1349802 (+) 210 WP_041587714.1 hypothetical protein -
  THERJR_RS06465 (TherJR_1276) - 1349873..1350136 (+) 264 WP_013120156.1 hypothetical protein -
  THERJR_RS06470 (TherJR_1277) recA 1350312..1351343 (+) 1032 WP_013120157.1 recombinase RecA Machinery gene
  THERJR_RS06475 (TherJR_1278) - 1351336..1351809 (+) 474 WP_013120158.1 regulatory protein RecX -
  THERJR_RS06480 (TherJR_1279) rny 1352162..1353703 (+) 1542 WP_282432036.1 ribonuclease Y -
  THERJR_RS06485 (TherJR_1280) - 1353924..1354445 (+) 522 WP_013120160.1 hypothetical protein -
  THERJR_RS06490 (TherJR_1281) - 1354490..1355269 (+) 780 WP_013120161.1 TIGR00282 family metallophosphoesterase -
  THERJR_RS06495 (TherJR_1282) spoVS 1355415..1355675 (+) 261 WP_041587715.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37037.42 Da        Isoelectric Point: 5.5389

>NTDB_id=37230 THERJR_RS06470 WP_013120157.1 1350312..1351343(+) (recA) [Thermincola potens JR]
MSDKLKALDMALSQIEKQFGKGSIMKLGEASAKMNIEVIPTGALALDVALGVGGVPRGRVVEIYGPESSGKTTVALHIIA
EAQKLGGTAAFIDAEHALDPYYARKLGVDIDNLLVSQPDTGEQALEIAEALVRSGAIDVIVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLTGAISKSRTTAIFINQIREKVGVMFGNPETTPGGRALKFYASVRMEVRKIESLKQGADVIGSR
TRVKVVKNKVAPPFKQADFDITYGEGISREGSIIDMATDLNILNKSGAWYSYKDERLGQGRENVKEYLKEHPEIANEIEE
KIRESLGLHKNPEVTDEGLEING

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=37230 THERJR_RS06470 WP_013120157.1 1350312..1351343(+) (recA) [Thermincola potens JR]
ATGTCTGATAAATTAAAGGCCTTGGATATGGCGTTGAGCCAAATTGAAAAGCAGTTTGGTAAGGGTTCCATTATGAAGCT
TGGCGAAGCATCAGCCAAAATGAACATTGAGGTTATCCCCACCGGGGCTCTTGCCCTGGATGTTGCATTAGGGGTGGGAG
GGGTCCCCCGGGGCCGGGTTGTAGAAATATATGGGCCGGAATCTTCAGGTAAGACGACAGTTGCCTTACATATTATTGCT
GAAGCGCAAAAACTTGGCGGAACGGCTGCCTTTATTGACGCGGAACACGCTCTGGACCCCTACTATGCAAGAAAATTAGG
GGTGGACATAGACAATTTACTGGTATCCCAGCCTGACACCGGCGAGCAGGCTTTGGAAATTGCTGAAGCCCTGGTCAGAA
GCGGCGCCATAGATGTTATTGTTGTTGACTCTGTTGCGGCGCTGGTACCGCGAGCAGAGATAGAAGGTGAAATGGGCGAT
GCCCATGTCGGCCTGCAGGCCAGGTTGATGTCCCAGGCCTTAAGAAAATTGACAGGCGCCATTAGCAAGTCTCGCACAAC
GGCAATATTTATCAACCAAATCAGAGAAAAAGTAGGCGTAATGTTTGGCAACCCGGAGACCACGCCAGGTGGGCGAGCCT
TGAAATTTTACGCCAGTGTTAGGATGGAAGTAAGGAAAATTGAATCTTTAAAGCAGGGCGCAGATGTAATTGGCAGCAGG
ACCAGGGTTAAAGTAGTAAAGAATAAGGTTGCGCCGCCTTTTAAGCAGGCAGATTTTGATATCACCTATGGCGAGGGTAT
TTCCAGGGAAGGCAGTATTATTGATATGGCAACAGATTTAAATATTTTAAATAAGAGCGGCGCTTGGTATTCGTACAAGG
ACGAGAGACTGGGGCAGGGCAGGGAAAATGTTAAGGAATACTTGAAAGAGCATCCGGAAATTGCCAACGAAATTGAGGAA
AAGATCAGGGAAAGTCTTGGTTTGCACAAAAACCCTGAGGTTACAGATGAGGGCTTGGAAATAAATGGATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5XER8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

74.622

96.501

0.72
  recA Latilactobacillus sakei subsp. sakei 23K

69.419

95.335

0.662
  recA Ralstonia pseudosolanacearum GMI1000

68.847

93.586

0.644
  recA Streptococcus pneumoniae TIGR4

64.431

100

0.644
  recA Streptococcus pneumoniae Rx1

64.431

100

0.644
  recA Streptococcus pneumoniae D39

64.431

100

0.644
  recA Streptococcus pneumoniae R6

64.431

100

0.644
  recA Helicobacter pylori 26695

64.327

99.708

0.641
  recA Helicobacter pylori strain NCTC11637

64.035

99.708

0.638
  recA Streptococcus mitis NCTC 12261

64.012

98.834

0.633
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.854

95.627

0.63
  recA Acinetobacter baylyi ADP1

66.667

94.461

0.63
  recA Neisseria gonorrhoeae strain FA1090

67.29

93.586

0.63
  recA Neisseria gonorrhoeae MS11

67.29

93.586

0.63
  recA Neisseria gonorrhoeae MS11

67.29

93.586

0.63
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

95.918

0.627
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.955

96.501

0.627
  recA Vibrio cholerae strain A1552

64.955

96.501

0.627
  recA Streptococcus mitis SK321

64.955

96.501

0.627
  recA Pseudomonas stutzeri DSM 10701

65.741

94.461

0.621
  recA Acinetobacter baumannii D1279779

65.741

94.461

0.621
  recA Streptococcus mutans UA159

64.545

96.21

0.621
  recA Lactococcus lactis subsp. cremoris KW2

63.664

97.085

0.618
  recA Streptococcus pyogenes NZ131

64.438

95.918

0.618
  recA Glaesserella parasuis strain SC1401

64.024

95.627

0.612
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.174

93.586

0.601

Multiple sequence alignment