Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FM071_RS00515 Genome accession   NZ_CP041406
Coordinates   102278..103315 (+) Length   345 a.a.
NCBI ID   WP_193111061.1    Uniprot ID   -
Organism   Sulfurimonas paralvinellae strain GO25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 97278..108315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FM071_RS00490 (FM071_00485) tpx 98341..98847 (+) 507 WP_193111052.1 thiol peroxidase -
  FM071_RS00495 (FM071_00490) - 99099..99866 (+) 768 WP_193111053.1 TIGR04219 family outer membrane beta-barrel protein -
  FM071_RS00500 (FM071_00495) - 99882..100694 (-) 813 WP_193111055.1 UDP-N-acetylmuramate dehydrogenase -
  FM071_RS00505 (FM071_00500) fliQ 100694..100960 (-) 267 WP_193111057.1 flagellar biosynthesis protein FliQ -
  FM071_RS00510 (FM071_00505) - 100961..101824 (-) 864 WP_193111059.1 MqnA/MqnD/SBP family protein -
  FM071_RS00515 (FM071_00510) recA 102278..103315 (+) 1038 WP_193111061.1 recombinase RecA Machinery gene
  FM071_RS00520 (FM071_00515) eno 103373..104638 (+) 1266 WP_193111063.1 phosphopyruvate hydratase -
  FM071_RS00525 (FM071_00520) - 104647..104925 (+) 279 WP_193111064.1 hypothetical protein -
  FM071_RS00530 (FM071_00525) - 104970..105626 (+) 657 WP_193111066.1 AMIN domain-containing protein -
  FM071_RS00535 (FM071_00530) - 105657..106346 (+) 690 WP_193111068.1 glucosaminidase domain-containing protein -
  FM071_RS00540 (FM071_00535) mgtE 106374..107702 (+) 1329 WP_193111070.1 magnesium transporter -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37401.03 Da        Isoelectric Point: 4.8721

>NTDB_id=371844 FM071_RS00515 WP_193111061.1 102278..103315(+) (recA) [Sulfurimonas paralvinellae strain GO25]
MDANKQKSLDLAMKQIDKAFGKGALMRLGDKDIEPIQSISTGSLGLDLALGINGVPQGRVVEVYGPESSGKTTLALQITA
ECQKQGGVCAFIDAEHALDVIYAKNLGVDIDNLLVSQPDYGEQALDIVETVARSGAVDLIVIDSVAALTPKVELEGEMND
QQVGVQARLMSKALRKLTGVLSKMNCTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGESQIGN
RVKAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIIDKSGAWFSYGETKLGQGRENVKAKFKEEPELAREIE
DKIREAMGMSSLMTMDTSEIAETDV

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=371844 FM071_RS00515 WP_193111061.1 102278..103315(+) (recA) [Sulfurimonas paralvinellae strain GO25]
ATGGATGCAAATAAACAAAAGTCATTAGACTTGGCTATGAAGCAGATAGACAAAGCTTTTGGTAAAGGTGCGTTAATGCG
CCTTGGTGATAAAGACATTGAACCTATACAGTCGATCTCTACAGGGTCGTTAGGGCTTGATCTTGCACTCGGTATCAATG
GTGTGCCACAGGGAAGAGTTGTTGAAGTTTATGGGCCGGAGAGTTCAGGGAAAACGACACTGGCACTACAGATTACGGCA
GAGTGTCAAAAACAGGGAGGCGTTTGTGCCTTTATTGATGCGGAACATGCACTTGATGTTATTTATGCGAAGAATCTTGG
AGTAGATATTGACAATCTATTGGTTTCACAGCCTGATTACGGTGAGCAGGCGCTTGATATCGTTGAAACAGTTGCAAGAA
GCGGTGCAGTTGATTTGATAGTGATTGACTCTGTTGCGGCATTGACACCAAAAGTAGAACTTGAAGGTGAAATGAACGAT
CAACAGGTCGGTGTTCAGGCTCGTTTGATGTCAAAAGCACTCCGTAAACTTACAGGAGTGCTTAGTAAGATGAACTGTAC
GGTTATTTTCATTAACCAGATTCGTATGAAAATAGGGATGATGGGGTACGGATCACCTGAAACTACAACAGGTGGAAATG
CATTGAAGTTCTATGCATCTGTTCGTATCGATGTACGACGTATCGCTTCGCTTAAACAGGGTGAGAGTCAGATCGGTAAC
CGTGTAAAAGCGAAAGTCATTAAAAATAAGGTAGCGCCGCCGTTCCGCCAAGCAGAGTTTGACATCATGTTTGGCGAAGG
AATCTCTAAAGAAGGTGAGCTTGTTGACTATGGTGTAAAGCTTGATATAATTGATAAAAGCGGAGCATGGTTTAGCTATG
GTGAGACAAAACTGGGTCAGGGACGTGAAAATGTCAAAGCGAAGTTCAAAGAAGAACCGGAACTCGCACGTGAGATAGAA
GATAAAATTCGTGAAGCAATGGGAATGAGTTCGCTGATGACAATGGATACTTCAGAAATAGCCGAAACTGACGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

77.744

95.072

0.739
  recA Helicobacter pylori strain NCTC11637

77.134

95.072

0.733
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.449

96.812

0.73
  recA Neisseria gonorrhoeae MS11

62.319

100

0.623
  recA Neisseria gonorrhoeae MS11

62.319

100

0.623
  recA Neisseria gonorrhoeae strain FA1090

62.319

100

0.623
  recA Acinetobacter baylyi ADP1

61.337

99.71

0.612
  recA Ralstonia pseudosolanacearum GMI1000

63.83

95.362

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.236

95.942

0.597
  recA Acinetobacter baumannii D1279779

62.997

94.783

0.597
  recA Pseudomonas stutzeri DSM 10701

59.195

100

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

61.094

95.362

0.583
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.162

94.783

0.58
  recA Vibrio cholerae strain A1552

61.162

94.783

0.58
  recA Glaesserella parasuis strain SC1401

61.3

93.623

0.574
  recA Lactococcus lactis subsp. cremoris KW2

57.143

99.42

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

56.627

96.232

0.545
  recA Streptococcus pneumoniae TIGR4

53.89

100

0.542
  recA Streptococcus pneumoniae Rx1

53.89

100

0.542
  recA Streptococcus pneumoniae D39

53.89

100

0.542
  recA Streptococcus pneumoniae R6

53.89

100

0.542
  recA Streptococcus mitis NCTC 12261

53.913

100

0.539
  recA Streptococcus pyogenes NZ131

56.707

95.072

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.099

93.913

0.536
  recA Streptococcus mitis SK321

53.623

100

0.536
  recA Streptococcus mutans UA159

55.319

95.362

0.528

Multiple sequence alignment