Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DXK01_RS12560 Genome accession   NZ_CP041379
Coordinates   3382326..3383363 (-) Length   345 a.a.
NCBI ID   WP_007665644.1    Uniprot ID   A0A414Z5V4
Organism   Bacteroides intestinalis strain APC919/174     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3382856..3402045 3382326..3383363 flank -507


Gene organization within MGE regions


Location: 3382326..3402045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXK01_RS12560 (DXK01_012560) recA 3382326..3383363 (-) 1038 WP_007665644.1 recombinase RecA Machinery gene
  DXK01_RS12565 (DXK01_012565) bcp 3383525..3383971 (-) 447 WP_167507391.1 thioredoxin-dependent thiol peroxidase -
  DXK01_RS12570 (DXK01_012570) - 3384075..3385268 (-) 1194 WP_022391544.1 saccharopine dehydrogenase family protein -
  DXK01_RS12575 (DXK01_012575) - 3385533..3386324 (+) 792 WP_115502948.1 META domain-containing protein -
  DXK01_RS12580 (DXK01_012580) - 3386389..3386715 (-) 327 WP_115502947.1 DMT family transporter -
  DXK01_RS12585 (DXK01_012585) - 3386787..3387350 (-) 564 WP_007665632.1 Crp/Fnr family transcriptional regulator -
  DXK01_RS12590 (DXK01_012590) - 3387549..3388124 (-) 576 WP_115502946.1 Crp/Fnr family transcriptional regulator -
  DXK01_RS12595 (DXK01_012595) - 3388063..3389496 (-) 1434 WP_044534314.1 MATE family efflux transporter -
  DXK01_RS12600 (DXK01_012600) dnaK 3389822..3391741 (+) 1920 WP_115502945.1 molecular chaperone DnaK -
  DXK01_RS12610 (DXK01_012610) - 3391954..3392517 (+) 564 WP_072067362.1 helix-turn-helix domain-containing protein -
  DXK01_RS12615 (DXK01_012615) - 3392514..3393776 (+) 1263 WP_009276700.1 site-specific integrase -
  DXK01_RS12620 (DXK01_012620) mads1 3394090..3394443 (+) 354 WP_004313943.1 methylation-associated defense system helix-turn-helix domain-containing protein MAD1 -
  DXK01_RS12625 (DXK01_012625) - 3394440..3395039 (+) 600 WP_010185565.1 BT4734/BF3469 family protein -
  DXK01_RS12630 (DXK01_012630) - 3394990..3396792 (+) 1803 WP_009276698.1 DUF3987 domain-containing protein -
  DXK01_RS12635 (DXK01_012635) - 3396888..3397262 (+) 375 WP_009276697.1 MobC family plasmid mobilization relaxosome protein -
  DXK01_RS12640 (DXK01_012640) - 3397246..3398148 (+) 903 WP_009276696.1 relaxase/mobilization nuclease domain-containing protein -
  DXK01_RS12645 (DXK01_012645) - 3398148..3398795 (+) 648 WP_009276695.1 hypothetical protein -
  DXK01_RS12650 (DXK01_012650) - 3398903..3399553 (+) 651 WP_009276694.1 master DNA invertase Mpi family serine-type recombinase -
  DXK01_RS22785 - 3399525..3400013 (+) 489 WP_167507392.1 DNA modification methylase -
  DXK01_RS12660 (DXK01_012660) - 3399999..3400358 (-) 360 WP_050551128.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37168.59 Da        Isoelectric Point: 5.3708

>NTDB_id=371736 DXK01_RS12560 WP_007665644.1 3382326..3383363(-) (recA) [Bacteroides intestinalis strain APC919/174]
MAKKDELNFENENKIAPSEKLKALQAAMDKIEKSFGKGSIMKMGDESVEQVEVIPTGSIGLNVALGVGGYPRGRIIEIYG
PESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQPDNGEQALEIAEQLIRSSAIDIIVVDSV
AALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIR
GSQAIKNGDEVLGKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWFSYNETKLAQGRDAAK
QVVADNPELAEELEGLIFEALRKDK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=371736 DXK01_RS12560 WP_007665644.1 3382326..3383363(-) (recA) [Bacteroides intestinalis strain APC919/174]
ATGGCAAAGAAAGACGAACTTAATTTTGAGAACGAAAATAAAATAGCACCAAGCGAAAAGCTGAAAGCTTTGCAGGCAGC
TATGGACAAGATAGAAAAGAGCTTCGGCAAGGGTTCTATCATGAAAATGGGAGACGAAAGCGTCGAACAAGTAGAAGTAA
TCCCCACGGGCTCTATCGGACTGAATGTAGCACTTGGCGTTGGCGGCTATCCCCGCGGACGTATCATTGAAATTTATGGT
CCGGAATCTTCCGGTAAAACGACTCTGGCTATCCATGCCATTGCCGAAGCACAAAAAGCAGGGGGCATTGCCGCATTCAT
TGATGCAGAACATGCATTCGACCGTTTCTATGCTGCCAAGTTGGGTGTAGATGTAGACAACCTATTGATTTCTCAACCGG
ACAATGGAGAACAAGCTCTGGAAATTGCAGAACAGCTGATCCGTTCTTCTGCAATCGATATCATCGTCGTGGACTCTGTA
GCTGCTCTGACTCCAAAAGCAGAAATTGAAGGTGACATGGGTGACAATAAGGTTGGTTTGCAGGCACGTCTGATGTCTCA
GGCATTGCGTAAACTGACAGCAGCCGTAAGCAAGACACGTACCACATGTATCTTCATCAATCAGCTGCGTGAAAAGATTG
GCGTTATGTTTGGTAATCCTGAAACAACTACTGGTGGTAATGCCTTGAAGTTCTATGCTTCGGTACGTCTGGATATTCGC
GGAAGCCAGGCTATCAAGAACGGTGACGAAGTATTAGGCAAGCAGACTAAAGTAAAAGTAGTAAAGAACAAAGTGGCACC
TCCTTTCCGTAGAGCAGAATTTGATATCATGTTCGGTGAAGGTATTTCCCGCGCCGGTGAAATCATTGATTTGGGTGCAG
ATTTAGGTATCATCAAGAAAAGCGGTTCCTGGTTCAGCTATAATGAAACGAAACTGGCACAGGGACGTGATGCAGCCAAA
CAAGTGGTTGCCGATAATCCGGAACTGGCAGAAGAACTGGAAGGATTGATTTTCGAGGCACTTAGAAAGGACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A414Z5V4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

70.303

95.652

0.672
  recA Streptococcus mitis SK321

63.018

97.971

0.617
  recA Streptococcus mitis NCTC 12261

63.018

97.971

0.617
  recA Neisseria gonorrhoeae MS11

66.562

92.754

0.617
  recA Neisseria gonorrhoeae MS11

66.562

92.754

0.617
  recA Neisseria gonorrhoeae strain FA1090

66.562

92.754

0.617
  recA Glaesserella parasuis strain SC1401

64.634

95.072

0.614
  recA Ralstonia pseudosolanacearum GMI1000

68.167

90.145

0.614
  recA Streptococcus pyogenes NZ131

62.426

97.971

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.984

91.304

0.612
  recA Streptococcus pneumoniae D39

62.13

97.971

0.609
  recA Streptococcus pneumoniae Rx1

62.13

97.971

0.609
  recA Streptococcus pneumoniae R6

62.13

97.971

0.609
  recA Streptococcus pneumoniae TIGR4

62.13

97.971

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

66.987

90.435

0.606
  recA Helicobacter pylori strain NCTC11637

63.58

93.913

0.597
  recA Helicobacter pylori 26695

63.272

93.913

0.594
  recA Acinetobacter baumannii D1279779

63.043

93.333

0.588
  recA Acinetobacter baylyi ADP1

62.733

93.333

0.586
  recA Lactococcus lactis subsp. cremoris KW2

59.763

97.971

0.586
  recA Pseudomonas stutzeri DSM 10701

63.81

91.304

0.583
  recA Vibrio cholerae strain A1552

62.112

93.333

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

93.333

0.58
  recA Streptococcus mutans UA159

62.5

92.754

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

94.203

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

61.755

92.464

0.571

Multiple sequence alignment