Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FLM48_RS06435 Genome accession   NZ_CP041329
Coordinates   1466608..1467669 (+) Length   353 a.a.
NCBI ID   WP_028774059.1    Uniprot ID   -
Organism   Shewanella sp. Scap07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1461608..1472669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLM48_RS06420 (FLM48_06485) - 1461637..1462551 (+) 915 WP_179024086.1 peptidoglycan DD-metalloendopeptidase family protein -
  FLM48_RS06425 (FLM48_06490) rpoS 1462632..1463603 (+) 972 WP_028774061.1 RNA polymerase sigma factor RpoS -
  FLM48_RS06430 (FLM48_06495) mutS 1463737..1466259 (-) 2523 WP_179026292.1 DNA mismatch repair protein MutS -
  FLM48_RS06435 (FLM48_06500) recA 1466608..1467669 (+) 1062 WP_028774059.1 recombinase RecA Machinery gene
  FLM48_RS06440 (FLM48_06505) - 1467714..1468187 (+) 474 WP_256871071.1 regulatory protein RecX -
  FLM48_RS06445 (FLM48_06510) alaS 1468570..1471194 (+) 2625 WP_179024087.1 alanine--tRNA ligase -
  FLM48_RS06450 (FLM48_06515) csrA 1471563..1471760 (+) 198 WP_028774694.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37653.10 Da        Isoelectric Point: 4.8000

>NTDB_id=371223 FLM48_RS06435 WP_028774059.1 1466608..1467669(+) (recA) [Shewanella sp. Scap07]
MSIDANKEKALTAVLGQIEKQFGKGSIMKLGENRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKVCAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDRDEVIG
NETRVKVVKNKIAAPFKQAEFQILYGEGINRTGELVDLGVAHKLVEKAGAWYSYKGSKIGQGRANAGKYLIENPEISAEI
EAALRAMLLSSGEAVAESATGDENIDMETGEVF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=371223 FLM48_RS06435 WP_028774059.1 1466608..1467669(+) (recA) [Shewanella sp. Scap07]
ATGAGTATTGATGCGAATAAAGAGAAAGCACTGACAGCGGTACTAGGCCAAATTGAGAAGCAGTTTGGTAAAGGCTCTAT
CATGAAGCTAGGTGAAAACCGCTCGATGGATGTTGAAACTATTTCTACCGGTTCACTTTCTCTTGACGTTGCTTTGGGCG
CAGGTGGTTTACCAATGGGGCGTATCGTAGAGATTTACGGTCCAGAATCTTCAGGTAAAACGACATTAACGCTAGAAGTT
ATTGCAGCAGCTCAACGTGAAGGTAAAGTGTGTGCCTTTATCGATGCTGAGCACGCATTAGACCCGATTTATGCACAAAA
GCTAGGTGTTGATATCGATAACTTGCTTTGTTCACAGCCAGATACCGGTGAGCAAGCATTAGAGATTTGTGATGCGTTAA
CCCGCTCTGGTGCCGTCGACGTTATCATTGTTGACTCGGTAGCGGCATTAACCCCTAAAGCTGAAATTGAAGGTGAGATT
GGTGATTCTCATATGGGTCTTGCTGCCCGTATGATGAGCCAAGCAATGCGAAAGCTTGCTGGTAACCTCAAGCAATCAAA
TACTTTGCTGATTTTCATTAACCAAATTCGTATGAAAATTGGTGTGATGTTCGGTAACCCAGAAACCACAACCGGCGGTA
ACGCACTGAAGTTTTATGCCTCAGTCCGTTTAGATATTCGCCGCACCGGTGCCATTAAAGATCGCGATGAAGTGATTGGT
AATGAAACCCGCGTTAAAGTGGTTAAGAACAAAATTGCCGCACCATTTAAACAAGCAGAGTTCCAAATTTTATATGGTGA
AGGGATTAACCGTACTGGTGAGCTAGTTGACCTAGGCGTAGCCCATAAACTCGTAGAGAAAGCCGGTGCTTGGTATAGCT
ATAAAGGTAGCAAAATCGGTCAAGGGCGTGCCAATGCAGGTAAATACCTGATTGAAAACCCAGAGATTTCAGCTGAAATT
GAAGCGGCTTTACGTGCCATGTTACTGAGCAGCGGTGAAGCAGTTGCTGAATCTGCTACCGGTGATGAAAATATCGATAT
GGAGACTGGCGAGGTTTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

78.963

98.3

0.776
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.963

98.3

0.776
  recA Pseudomonas stutzeri DSM 10701

75.535

92.635

0.7
  recA Acinetobacter baylyi ADP1

70.968

96.601

0.686
  recA Acinetobacter baumannii D1279779

68.696

97.734

0.671
  recA Glaesserella parasuis strain SC1401

69.822

95.751

0.669
  recA Neisseria gonorrhoeae MS11

69.35

91.501

0.635
  recA Neisseria gonorrhoeae MS11

69.35

91.501

0.635
  recA Neisseria gonorrhoeae strain FA1090

69.35

91.501

0.635
  recA Ralstonia pseudosolanacearum GMI1000

70.418

88.102

0.62
  recA Streptococcus pneumoniae Rx1

61.877

96.601

0.598
  recA Streptococcus pneumoniae D39

61.877

96.601

0.598
  recA Streptococcus pneumoniae R6

61.877

96.601

0.598
  recA Streptococcus pneumoniae TIGR4

61.877

96.601

0.598
  recA Streptococcus mitis NCTC 12261

61.947

96.034

0.595
  recA Streptococcus mitis SK321

61.947

96.034

0.595
  recA Streptococcus pyogenes NZ131

58.592

100

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.654

91.785

0.575
  recA Streptococcus mutans UA159

61.92

91.501

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

94.334

0.567
  recA Helicobacter pylori strain NCTC11637

59.88

94.618

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.935

0.567
  recA Helicobacter pylori 26695

59.581

94.618

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.895

96.884

0.561
  recA Lactococcus lactis subsp. cremoris KW2

59.509

92.351

0.55
  recA Latilactobacillus sakei subsp. sakei 23K

60.312

90.652

0.547

Multiple sequence alignment