Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FFV09_RS19900 Genome accession   NZ_CP041217
Coordinates   4751964..4753025 (+) Length   353 a.a.
NCBI ID   WP_141449457.1    Uniprot ID   A0A4Y6UYT8
Organism   Saccharibacillus brassicae strain ATSA2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4746964..4758025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFV09_RS19875 (FFV09_19875) - 4747084..4747851 (+) 768 WP_141449452.1 YmfK family protein -
  FFV09_RS19880 (FFV09_19880) - 4747920..4749041 (+) 1122 WP_141449453.1 RodZ domain-containing protein -
  FFV09_RS19885 (FFV09_19885) - 4749079..4749570 (+) 492 WP_141449454.1 YajQ family cyclic di-GMP-binding protein -
  FFV09_RS19890 (FFV09_19890) pgsA 4749739..4750326 (+) 588 WP_141449455.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FFV09_RS19895 (FFV09_19895) - 4750376..4751644 (+) 1269 WP_141449456.1 competence/damage-inducible protein A -
  FFV09_RS19900 (FFV09_19900) recA 4751964..4753025 (+) 1062 WP_141449457.1 recombinase RecA Machinery gene
  FFV09_RS19905 (FFV09_19905) - 4753165..4753965 (+) 801 WP_141449458.1 RecX family transcriptional regulator -
  FFV09_RS19910 (FFV09_19910) rny 4754277..4755818 (+) 1542 WP_141449459.1 ribonuclease Y -
  FFV09_RS19915 (FFV09_19915) - 4755964..4756761 (+) 798 WP_141449460.1 TIGR00282 family metallophosphoesterase -
  FFV09_RS19920 (FFV09_19920) - 4756940..4757200 (+) 261 WP_141449461.1 stage V sporulation protein S -
  FFV09_RS19925 (FFV09_19925) - 4757402..4757974 (+) 573 WP_141449462.1 phosphate propanoyltransferase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38261.71 Da        Isoelectric Point: 5.0042

>NTDB_id=370655 FFV09_RS19900 WP_141449457.1 4751964..4753025(+) (recA) [Saccharibacillus brassicae strain ATSA2]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMNVEVVPSGSIALDVALGTGGMPRGRIIEIYGPESSGKTTVALHAVAE
VQKAGGQAAFIDAEHALDPKYAYNLGVNVDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSNTIAIFINQLREKIGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKMGNDIVGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISKEGSLIDMGTEMDIVEKSGAWYSYSGERLGQGRENAKQFLKDHKEISLAIETK
IRQASNLITLVEEPTEAQKKAEADEEQELLEIE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=370655 FFV09_RS19900 WP_141449457.1 4751964..4753025(+) (recA) [Saccharibacillus brassicae strain ATSA2]
TTGTCAGATCGTCGTGCTGCGCTGGATATGGCGCTTCGCCAAATAGAGAAACAATTCGGAAAAGGTTCCATCATGAAGCT
TGGAGAATCGACTCACATGAACGTCGAGGTCGTACCGAGCGGTTCTATCGCTCTGGACGTCGCATTGGGAACGGGCGGAA
TGCCGCGCGGACGGATCATCGAAATTTACGGACCGGAATCTTCGGGTAAGACGACCGTTGCGCTGCACGCGGTAGCCGAA
GTGCAAAAAGCAGGCGGACAAGCCGCTTTCATCGACGCCGAGCACGCGCTCGATCCGAAGTACGCTTATAACCTGGGCGT
TAACGTCGACGAACTGCTGCTCTCGCAGCCGGATACCGGCGAGCAAGGCCTTGAAATCGCCGAAGCACTCGTACGCAGCG
GCGCGGTCGATATCATCGTTATCGACTCCGTAGCGGCTCTCGTACCAAAAGCCGAAATCGAAGGCGAAATGGGCGACTCC
CACGTCGGTCTGCAAGCCCGCCTGATGTCTCAGGCGCTTCGCAAACTGTCCGGAGCCATCAGCAAGTCGAACACGATCGC
CATCTTCATCAACCAGCTTCGCGAAAAAATCGGCGTTATGTTCGGTAACCCGGAGACAACGCCGGGCGGCCGCGCGCTGA
AGTTCTATTCGACCGTACGTCTTGACGTGCGCCGTATCGAGTCTATCAAAATGGGCAACGATATCGTCGGCAACCGGACA
CGTATCAAAGTCGTGAAGAACAAAGTCGCACCTCCGTTCAAACAAGCGGAAGTGGATATCATGTACGGAGAAGGCATTTC
CAAAGAAGGCAGCCTGATCGATATGGGAACCGAGATGGACATCGTCGAAAAAAGCGGTGCGTGGTATTCCTACTCGGGCG
AGCGTCTGGGTCAAGGCCGCGAGAACGCGAAACAATTCCTCAAAGACCACAAAGAAATTTCGCTCGCGATCGAAACGAAG
ATTCGCCAAGCCAGCAATCTGATTACGCTTGTCGAAGAACCGACCGAAGCTCAGAAAAAGGCCGAAGCGGACGAAGAACA
AGAACTGCTCGAAATCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6UYT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.04

92.635

0.751
  recA Latilactobacillus sakei subsp. sakei 23K

73.134

94.901

0.694
  recA Streptococcus pneumoniae D39

65.909

99.717

0.657
  recA Streptococcus pneumoniae Rx1

65.909

99.717

0.657
  recA Streptococcus pneumoniae R6

65.909

99.717

0.657
  recA Streptococcus pneumoniae TIGR4

65.909

99.717

0.657
  recA Streptococcus mutans UA159

65.156

100

0.652
  recA Streptococcus mitis NCTC 12261

67.251

96.884

0.652
  recA Streptococcus mitis SK321

66.959

96.884

0.649
  recA Streptococcus pyogenes NZ131

68.827

91.785

0.632
  recA Lactococcus lactis subsp. cremoris KW2

66.767

93.768

0.626
  recA Ralstonia pseudosolanacearum GMI1000

66.972

92.635

0.62
  recA Neisseria gonorrhoeae MS11

64.97

94.618

0.615
  recA Neisseria gonorrhoeae strain FA1090

64.97

94.618

0.615
  recA Neisseria gonorrhoeae MS11

64.97

94.618

0.615
  recA Acinetobacter baylyi ADP1

60.511

99.717

0.603
  recA Acinetobacter baumannii D1279779

60.057

98.584

0.592
  recA Vibrio cholerae strain A1552

64.798

90.935

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.798

90.935

0.589
  recA Glaesserella parasuis strain SC1401

60.29

97.734

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.777

91.501

0.584
  recA Helicobacter pylori 26695

60.177

96.034

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

92.635

0.578
  recA Pseudomonas stutzeri DSM 10701

62.08

92.635

0.575
  recA Helicobacter pylori strain NCTC11637

59.882

96.034

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

91.501

0.567

Multiple sequence alignment