Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FJ695_RS13725 Genome accession   NZ_CP041191
Coordinates   3058357..3059424 (+) Length   355 a.a.
NCBI ID   WP_141185982.1    Uniprot ID   A0A4Y6RVB5
Organism   Labrenzia sp. PHM005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3053357..3064424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJ695_RS13705 (FJ695_13705) - 3053625..3054551 (-) 927 WP_141185978.1 DUF6384 family protein -
  FJ695_RS13710 (FJ695_13710) - 3054618..3055823 (-) 1206 WP_141185979.1 cell surface protein -
  FJ695_RS13715 (FJ695_13715) - 3056064..3056996 (-) 933 WP_305778403.1 pseudouridine-5'-phosphate glycosidase -
  FJ695_RS13720 (FJ695_13720) - 3057114..3058049 (-) 936 WP_209011038.1 PfkB family carbohydrate kinase -
  FJ695_RS13725 (FJ695_13725) recA 3058357..3059424 (+) 1068 WP_141185982.1 recombinase RecA Machinery gene
  FJ695_RS13730 (FJ695_13730) alaS 3059740..3062397 (+) 2658 WP_141185983.1 alanine--tRNA ligase -
  FJ695_RS13735 (FJ695_13735) - 3062501..3063292 (-) 792 WP_168206366.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37846.32 Da        Isoelectric Point: 4.8459

>NTDB_id=370325 FJ695_RS13725 WP_141185982.1 3058357..3059424(+) (recA) [Labrenzia sp. PHM005]
MSQSTLRLVESSQMDKTKALDAALSQIERAFGKGSIMRMGQGQAVEVQAVSTGSLGLDIALGIGGLPKGRIVEIYGPESS
GKTTLALHTVAEAQKTGGICAFVDAEHALDPIYARKLGVDIDNLLISQPDAGEQALEIADTLVRSGAIDVLVIDSVAALT
PKAELEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGA
IKDRDEVVGNQTRVKVVKNKLAPPFRQVEFDIIYGEGVSKMGELIDLGVKGGIVEKSGAWFSYNSQRLGQGRENAKQFLK
DNPEVAEEIELAVRQNAGLIADAIIDPAGGTEDDD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=370325 FJ695_RS13725 WP_141185982.1 3058357..3059424(+) (recA) [Labrenzia sp. PHM005]
ATGTCGCAAAGTACACTTCGTCTCGTAGAAAGCAGCCAGATGGACAAGACAAAAGCGCTCGATGCAGCGCTCAGCCAGAT
CGAACGGGCCTTTGGTAAGGGCTCCATCATGCGGATGGGCCAGGGTCAGGCCGTGGAGGTGCAAGCCGTCTCAACCGGAT
CTCTCGGACTTGATATCGCACTTGGAATTGGCGGCCTGCCGAAGGGCCGCATTGTCGAAATCTACGGACCGGAGTCCTCC
GGTAAAACCACACTGGCGTTGCACACGGTGGCCGAAGCCCAGAAGACCGGCGGCATCTGTGCGTTTGTTGACGCCGAACA
TGCGTTGGACCCGATTTACGCCCGCAAGCTCGGTGTCGATATCGACAATCTTCTGATCTCCCAGCCCGATGCCGGGGAGC
AGGCGCTTGAAATTGCCGACACGCTTGTCCGGTCCGGCGCGATCGATGTTCTGGTGATTGACTCCGTTGCTGCGCTGACG
CCAAAAGCCGAGCTGGAAGGCGAAATGGGGGACAGCCTGCCGGGCATGCAGGCGCGTCTGATGAGCCAGGCCTTGCGCAA
GCTGACAGCCTCGATTTCCAAGTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGAGTGATGTTCG
GCTCACCGGAAACAACCACCGGCGGCAATGCTCTCAAATTTTATGCCTCTGTCCGTCTCGACATTCGCCGTATTGGGGCG
ATCAAAGACCGGGATGAGGTGGTCGGCAACCAGACCCGCGTTAAGGTCGTTAAAAACAAACTCGCACCGCCGTTCCGTCA
GGTCGAATTCGACATCATTTACGGGGAAGGCGTCTCGAAGATGGGCGAGCTCATCGATCTTGGTGTCAAAGGCGGCATTG
TCGAGAAATCTGGCGCCTGGTTTTCCTATAACAGCCAACGGCTCGGACAGGGCCGCGAGAACGCAAAGCAGTTCTTGAAG
GACAATCCGGAAGTGGCCGAAGAGATCGAATTGGCTGTCCGCCAGAACGCGGGCCTCATTGCCGATGCGATCATCGATCC
GGCTGGCGGTACTGAAGACGACGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6RVB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.646

92.394

0.662
  recA Acinetobacter baylyi ADP1

71.34

90.423

0.645
  recA Glaesserella parasuis strain SC1401

64.407

99.718

0.642
  recA Neisseria gonorrhoeae MS11

70.717

90.423

0.639
  recA Neisseria gonorrhoeae MS11

70.717

90.423

0.639
  recA Neisseria gonorrhoeae strain FA1090

70.717

90.423

0.639
  recA Acinetobacter baumannii D1279779

70.717

90.423

0.639
  recA Pseudomonas stutzeri DSM 10701

70.625

90.141

0.637
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.47

90.423

0.628
  recA Vibrio cholerae strain A1552

69.47

90.423

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.035

96.338

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.653

93.239

0.603
  recA Helicobacter pylori strain NCTC11637

65.538

91.549

0.6
  recA Helicobacter pylori 26695

64.923

91.549

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

63.746

93.239

0.594
  recA Streptococcus mitis SK321

60.231

97.746

0.589
  recA Streptococcus mitis NCTC 12261

59.942

97.746

0.586
  recA Latilactobacillus sakei subsp. sakei 23K

61.176

95.775

0.586
  recA Streptococcus pneumoniae TIGR4

59.366

97.746

0.58
  recA Streptococcus pneumoniae D39

59.366

97.746

0.58
  recA Streptococcus pneumoniae R6

59.366

97.746

0.58
  recA Streptococcus pneumoniae Rx1

59.366

97.746

0.58
  recA Streptococcus mutans UA159

61.515

92.958

0.572
  recA Lactococcus lactis subsp. cremoris KW2

60.36

93.803

0.566
  recA Streptococcus pyogenes NZ131

60.671

92.394

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.342

89.014

0.555

Multiple sequence alignment