Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FJQ89_RS15755 Genome accession   NZ_CP041185
Coordinates   3591676..3592776 (-) Length   366 a.a.
NCBI ID   WP_071075324.1    Uniprot ID   A0A2N0HTY7
Organism   Janthinobacterium tructae strain SNU WT1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3586676..3597776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ89_RS15735 (FJQ89_15735) sucC 3587240..3588409 (-) 1170 WP_071075328.1 ADP-forming succinate--CoA ligase subunit beta -
  FJQ89_RS15740 (FJQ89_15740) - 3588485..3589045 (-) 561 WP_071075327.1 DUF2889 domain-containing protein -
  FJQ89_RS15745 (FJQ89_15745) - 3589335..3590873 (-) 1539 WP_141170857.1 class I SAM-dependent methyltransferase -
  FJQ89_RS15750 (FJQ89_15750) recX 3590969..3591424 (-) 456 WP_071075325.1 recombination regulator RecX -
  FJQ89_RS15755 (FJQ89_15755) recA 3591676..3592776 (-) 1101 WP_071075324.1 recombinase RecA Machinery gene
  FJQ89_RS15760 (FJQ89_15760) - 3593025..3593759 (+) 735 WP_141170858.1 response regulator transcription factor -
  FJQ89_RS15765 (FJQ89_15765) - 3593756..3595288 (+) 1533 WP_243136071.1 sensor histidine kinase -
  FJQ89_RS15770 (FJQ89_15770) - 3595281..3595595 (+) 315 WP_141170859.1 DUF4212 domain-containing protein -
  FJQ89_RS15775 (FJQ89_15775) - 3595592..3597640 (+) 2049 WP_141170860.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 38955.61 Da        Isoelectric Point: 6.3119

>NTDB_id=370273 FJQ89_RS15755 WP_071075324.1 3591676..3592776(-) (recA) [Janthinobacterium tructae strain SNU WT1]
MDDKKAVVPASEKAKALAAALAQIEKQFGKGSVMRMDASAVIEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGVNLHELLISQPDTGEQALEICDALVRSGSVDLVVIDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGAGTSREGEILDLGSDAKIVEKSGSWYSYNGERIGQGKDNARAFLQER
PALAREIENKVRASLGVRELPPLAAEKPEKADKAADKAAKAEAKPE

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=370273 FJQ89_RS15755 WP_071075324.1 3591676..3592776(-) (recA) [Janthinobacterium tructae strain SNU WT1]
ATGGACGATAAAAAAGCTGTAGTACCCGCATCGGAAAAAGCCAAGGCGCTCGCCGCCGCACTGGCGCAGATCGAGAAGCA
GTTTGGCAAAGGTTCGGTCATGCGCATGGATGCCAGCGCGGTGATCGAAGAAGTGCAAGTCGTGTCGACCGGTTCGCTCG
GCCTCGATATCGCGCTGGGCGTAGGCGGCTTGCCGCGCGGCCGCGTGGTGGAAATCTACGGTCCTGAATCGTCGGGTAAA
ACCACGCTGACCCTGCAAACCATTGCTGAAATGCAAAAACTCGGCGGCACCTGCGCCTTTATCGATGCCGAGCACGCGCT
CGACGTCGGTTACGCGCAAAAGCTGGGCGTGAACCTGCACGAATTGCTGATCTCGCAACCGGACACGGGCGAGCAGGCAC
TGGAAATCTGCGACGCCCTCGTGCGTTCGGGCAGCGTCGACCTGGTCGTCATCGACTCCGTGGCCGCACTGACGCCACGC
GCCGAGATCGAAGGCGACATGGGCGACTCGCTGCCAGGCTTGCAAGCGCGCCTGATGTCGCAAGCCCTGCGTAAATTGAC
CGGTTCCATCAACCGCACGAATACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGTC
CTGAAACCACCACCGGCGGCAATGCGCTGAAATTCTACGCCTCCGTGCGCCTCGATATCCGCCGCACCGGCTCGATCAAG
TCCGGCGATGAAGTGATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCACCGTTCAAGGAAGCGCA
CTTCGACATCCTGTACGGCGCCGGCACCTCGCGCGAAGGCGAAATCCTGGACCTGGGCTCGGATGCCAAGATCGTGGAAA
AATCCGGTTCGTGGTACAGCTACAACGGCGAACGCATCGGCCAGGGCAAGGACAACGCCCGCGCCTTCCTGCAAGAGCGT
CCGGCGCTGGCCCGCGAGATCGAAAACAAGGTCCGCGCTTCGCTGGGCGTGCGTGAACTGCCCCCGCTGGCTGCTGAAAA
GCCGGAAAAAGCGGATAAAGCCGCCGACAAGGCTGCCAAGGCGGAAGCCAAGCCAGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N0HTY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.929

91.803

0.77
  recA Neisseria gonorrhoeae MS11

72.866

89.617

0.653
  recA Neisseria gonorrhoeae MS11

72.866

89.617

0.653
  recA Neisseria gonorrhoeae strain FA1090

72.866

89.617

0.653
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.412

92.896

0.645
  recA Vibrio cholerae strain A1552

69.412

92.896

0.645
  recA Glaesserella parasuis strain SC1401

66.571

94.809

0.631
  recA Pseudomonas stutzeri DSM 10701

70.898

88.251

0.626
  recA Acinetobacter baylyi ADP1

70.898

88.251

0.626
  recA Acinetobacter baumannii D1279779

70.588

88.251

0.623
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.265

90.71

0.601
  recA Helicobacter pylori 26695

62.682

93.716

0.587
  recA Helicobacter pylori strain NCTC11637

62.391

93.716

0.585
  recA Streptococcus mutans UA159

60.34

96.448

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

89.344

0.577
  recA Streptococcus mitis NCTC 12261

60.29

94.262

0.568
  recA Streptococcus pyogenes NZ131

63.222

89.891

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

62.727

90.164

0.566
  recA Streptococcus pneumoniae Rx1

62.236

90.437

0.563
  recA Streptococcus pneumoniae TIGR4

62.236

90.437

0.563
  recA Streptococcus pneumoniae D39

62.236

90.437

0.563
  recA Streptococcus pneumoniae R6

62.236

90.437

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.997

89.344

0.563
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

89.071

0.563
  recA Streptococcus mitis SK321

61.934

90.437

0.56
  recA Lactococcus lactis subsp. cremoris KW2

61.631

90.437

0.557

Multiple sequence alignment