Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SRM_RS08910 Genome accession   NC_014032
Coordinates   1971341..1972402 (-) Length   353 a.a.
NCBI ID   WP_011404279.1    Uniprot ID   A0A840D3W0
Organism   Salinibacter ruber M8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1966341..1977402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRM_RS08895 (SRM_01727) rnr 1966635..1968740 (+) 2106 WP_081580691.1 ribonuclease R -
  SRM_RS08900 (SRM_01728) - 1968806..1970068 (-) 1263 WP_051010933.1 DUF1015 domain-containing protein -
  SRM_RS08905 (SRM_01729) - 1970579..1971334 (-) 756 WP_013062021.1 phosphatase PAP2 family protein -
  SRM_RS08910 (SRM_01730) recA 1971341..1972402 (-) 1062 WP_011404279.1 recombinase RecA Machinery gene
  SRM_RS08915 (SRM_01731) - 1972623..1973531 (-) 909 WP_013062022.1 DUF4835 family protein -
  SRM_RS08920 (SRM_01732) - 1973777..1974565 (+) 789 WP_231847064.1 hypothetical protein -
  SRM_RS08925 (SRM_01733) - 1974576..1976681 (+) 2106 WP_013062024.1 helix-hairpin-helix domain-containing protein -
  SRM_RS08930 (SRM_01734) - 1976887..1977270 (+) 384 WP_043552317.1 response regulator -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38308.64 Da        Isoelectric Point: 4.2004

>NTDB_id=36955 SRM_RS08910 WP_011404279.1 1971341..1972402(-) (recA) [Salinibacter ruber M8]
MSDKDGEAKEKALDLAVEQIQRDHGEGAIMRLSDDPNQEVEAIPTGSLALDDALGIGGVPRGRITEIFGPESSGKTTLAA
HVVAEAQKLGGTCAFVDAEHAFDPNYAEQLGVDTDELLISQPDTGEQALNITDTLVRSGALDVIVIDSVSALVPQAELEG
DMGDTHVGLQARLMSQALRKLAGTINRTKTALIFINQIRMKIGVMFGNPETTSGGRALKFYSSVRMDIRRIGAVKDGQDV
VGNRTRVKVKKNKVAPPFKEAEFDLIYGEGISSLGEIIDLGTEYDILQKRGSWYSYQDETIAQGRENTKEWLEENDEQRD
EIKSALRGEIGLATVDEDSEEDEEEAEAAAEEA

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=36955 SRM_RS08910 WP_011404279.1 1971341..1972402(-) (recA) [Salinibacter ruber M8]
ATGTCAGACAAGGACGGAGAAGCAAAAGAAAAGGCCCTCGACCTCGCCGTTGAGCAAATTCAACGGGACCACGGCGAGGG
GGCAATCATGCGTCTCAGCGACGATCCCAACCAGGAGGTGGAGGCGATTCCGACGGGCTCCCTCGCGCTCGACGACGCGT
TGGGGATCGGGGGGGTCCCCCGTGGGCGCATCACCGAAATATTCGGGCCCGAGTCCTCCGGCAAGACGACCCTCGCAGCC
CACGTTGTTGCGGAGGCCCAGAAGCTTGGCGGGACGTGCGCGTTCGTGGACGCCGAGCACGCGTTCGATCCGAACTACGC
CGAGCAGCTCGGGGTGGACACGGACGAGCTTCTGATTTCGCAGCCGGACACCGGCGAGCAGGCCCTCAACATCACGGACA
CGCTGGTGCGCAGTGGGGCGCTCGACGTGATTGTCATCGACTCTGTGTCGGCGCTCGTGCCGCAGGCAGAACTGGAGGGG
GACATGGGCGACACCCATGTCGGCCTGCAGGCCCGCCTCATGAGCCAAGCCCTCCGCAAGCTGGCGGGCACCATCAACCG
CACGAAGACGGCCTTGATCTTCATCAACCAGATCCGAATGAAGATCGGGGTGATGTTCGGGAACCCGGAGACGACCTCCG
GCGGCCGCGCGCTGAAGTTCTACTCGTCGGTCCGCATGGACATTCGCCGGATTGGGGCCGTCAAGGACGGGCAGGATGTC
GTGGGCAACCGCACGCGCGTGAAGGTGAAGAAGAATAAGGTGGCGCCTCCGTTCAAGGAGGCGGAGTTTGACCTGATCTA
CGGGGAGGGCATCTCGTCGCTCGGAGAGATTATTGACCTGGGCACGGAGTACGACATTCTCCAGAAGCGTGGGTCCTGGT
ACTCGTACCAGGACGAAACCATCGCTCAGGGACGCGAAAACACGAAAGAGTGGCTGGAGGAAAACGACGAGCAGCGTGAC
GAGATCAAGTCGGCTCTGCGTGGGGAAATTGGGCTTGCAACGGTCGACGAGGACTCCGAGGAGGACGAAGAAGAGGCCGA
AGCCGCCGCCGAGGAAGCGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A840D3W0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

63.081

97.45

0.615
  recA Neisseria gonorrhoeae MS11

63.081

97.45

0.615
  recA Neisseria gonorrhoeae strain FA1090

63.081

97.45

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

63.855

94.051

0.601
  recA Ralstonia pseudosolanacearum GMI1000

64.024

92.918

0.595
  recA Acinetobacter baumannii D1279779

59.827

98.017

0.586
  recA Pseudomonas stutzeri DSM 10701

63.272

91.785

0.581
  recA Glaesserella parasuis strain SC1401

57.955

99.717

0.578
  recA Streptococcus pneumoniae Rx1

58.621

98.584

0.578
  recA Streptococcus pneumoniae D39

58.621

98.584

0.578
  recA Streptococcus pneumoniae R6

58.621

98.584

0.578
  recA Streptococcus pneumoniae TIGR4

58.621

98.584

0.578
  recA Streptococcus mitis NCTC 12261

58.286

99.15

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

60.177

96.034

0.578
  recA Acinetobacter baylyi ADP1

59.882

96.034

0.575
  recA Streptococcus mitis SK321

57.88

98.867

0.572
  recA Helicobacter pylori strain NCTC11637

61.963

92.351

0.572
  recA Helicobacter pylori 26695

61.35

92.351

0.567
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.876

95.751

0.564
  recA Streptococcus mutans UA159

56.695

99.433

0.564
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.371

90.935

0.558
  recA Vibrio cholerae strain A1552

61.371

90.935

0.558
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60

92.068

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.146

92.918

0.55
  recA Streptococcus pyogenes NZ131

57.313

94.901

0.544
  recA Lactococcus lactis subsp. cremoris KW2

56.509

95.751

0.541

Multiple sequence alignment