Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FIV34_RS06830 Genome accession   NZ_CP041046
Coordinates   1490561..1491604 (+) Length   347 a.a.
NCBI ID   WP_139980938.1    Uniprot ID   A0A4Y5Z321
Organism   Luteibacter pinisoli strain MAH-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1485561..1496604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV34_RS06810 (FIV34_06810) - 1486634..1487446 (-) 813 WP_246058770.1 TrbG/VirB9 family P-type conjugative transfer protein -
  FIV34_RS06815 (FIV34_06815) - 1487446..1488450 (-) 1005 WP_139980932.1 type IV secretion system protein -
  FIV34_RS06820 (FIV34_06820) - 1488471..1488914 (-) 444 WP_139980934.1 hypothetical protein -
  FIV34_RS06825 (FIV34_06825) - 1489953..1490462 (+) 510 WP_139980936.1 CinA family protein -
  FIV34_RS06830 (FIV34_06830) recA 1490561..1491604 (+) 1044 WP_139980938.1 recombinase RecA Machinery gene
  FIV34_RS06835 (FIV34_06835) - 1491585..1492073 (+) 489 WP_246058771.1 regulatory protein RecX -
  FIV34_RS06840 (FIV34_06840) alaS 1492142..1494775 (+) 2634 WP_139980942.1 alanine--tRNA ligase -
  FIV34_RS06845 (FIV34_06845) csrA 1495078..1495284 (+) 207 WP_139980944.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37122.25 Da        Isoelectric Point: 5.1874

>NTDB_id=369162 FIV34_RS06830 WP_139980938.1 1490561..1491604(+) (recA) [Luteibacter pinisoli strain MAH-14]
MDDNKRKALASALGQIEKQFGKGAVMRLGDRVDDQIDTVSTGSLGLDIALGIGGLPRGRVVEIYGPESSGKTTLTLQAIA
SCQRAGGTAAFVDAEHALDPGYAEKLGVNVADLLVSQPDTGEQALEIADMLVRSGAVDMVVVDSVAALTPKAEIEGEMGD
SHVGLHARLMSQALRKLTANIKKTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKKGDEVIGSE
TRVKVVKNKVAPPFRQAEFEILYGEGTSREGEIIELGVRENLIDKSGAWYSYKGDRIGQGKENVRQFLRDNPAIANEVDT
ELRARLLVKAGPSASAANAEQDEVEEA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=369162 FIV34_RS06830 WP_139980938.1 1490561..1491604(+) (recA) [Luteibacter pinisoli strain MAH-14]
ATGGACGACAATAAGCGCAAGGCGCTGGCGAGTGCCCTCGGCCAGATCGAAAAGCAGTTTGGCAAGGGTGCGGTCATGCG
TCTTGGCGACCGCGTGGACGACCAGATCGACACCGTCTCCACCGGTTCGCTGGGCCTGGACATCGCCCTCGGCATCGGCG
GCCTGCCGCGCGGCCGTGTCGTGGAAATCTACGGTCCGGAATCGTCGGGCAAGACCACGCTCACCCTGCAGGCCATCGCA
TCCTGCCAGCGCGCTGGCGGCACGGCGGCCTTCGTGGACGCCGAGCACGCGCTGGACCCGGGCTACGCCGAGAAGCTGGG
CGTGAACGTGGCCGACCTGCTGGTCAGCCAGCCGGATACCGGCGAGCAGGCCCTCGAAATCGCCGACATGCTGGTGCGCT
CCGGCGCCGTGGACATGGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCGAAGGCGGAAATCGAAGGCGAGATGGGTGAC
TCCCACGTCGGCCTGCACGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTCACGGCCAACATTAAGAAGACGAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACGGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTCCGCCTCGACATCCGCCGCATCGGCGCGGTGAAGAAGGGCGATGAAGTGATCGGCTCGGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCGCCGCCGTTCCGCCAGGCCGAGTTCGAGATCCTCTATGGCGAAGGCAC
CTCGCGCGAAGGCGAGATCATCGAGCTGGGCGTGCGCGAAAACCTCATCGACAAGTCGGGCGCCTGGTACAGCTACAAGG
GTGACCGCATCGGCCAGGGCAAGGAAAACGTCCGCCAGTTCCTGCGCGACAACCCGGCCATCGCCAACGAAGTGGACACG
GAACTGCGTGCCCGCCTGCTGGTGAAGGCTGGGCCGAGCGCTTCCGCGGCCAATGCTGAGCAGGATGAGGTCGAAGAAGC
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y5Z321

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.471

97.983

0.749
  recA Acinetobacter baylyi ADP1

73.121

99.712

0.729
  recA Ralstonia pseudosolanacearum GMI1000

70.704

100

0.723
  recA Glaesserella parasuis strain SC1401

68.857

100

0.695
  recA Neisseria gonorrhoeae strain FA1090

73.846

93.66

0.692
  recA Neisseria gonorrhoeae MS11

73.846

93.66

0.692
  recA Neisseria gonorrhoeae MS11

73.846

93.66

0.692
  recA Acinetobacter baumannii D1279779

73.089

94.236

0.689
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.171

94.236

0.68
  recA Vibrio cholerae strain A1552

72.171

94.236

0.68
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.841

100

0.648
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.569

96.254

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

66.25

92.219

0.611
  recA Helicobacter pylori strain NCTC11637

64.198

93.372

0.599
  recA Helicobacter pylori 26695

63.889

93.372

0.597
  recA Streptococcus mutans UA159

59.026

100

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

59.942

98.559

0.591
  recA Streptococcus mitis SK321

59.302

99.135

0.588
  recA Streptococcus pyogenes NZ131

61.585

94.524

0.582
  recA Streptococcus pneumoniae Rx1

59.118

97.983

0.579
  recA Streptococcus pneumoniae D39

59.118

97.983

0.579
  recA Streptococcus pneumoniae R6

59.118

97.983

0.579
  recA Streptococcus pneumoniae TIGR4

59.118

97.983

0.579
  recA Streptococcus mitis NCTC 12261

61.043

93.948

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.485

95.101

0.556
  recA Lactococcus lactis subsp. cremoris KW2

59.627

92.795

0.553

Multiple sequence alignment