Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FH041_RS00505 Genome accession   NZ_CP040930
Coordinates   109159..110226 (+) Length   355 a.a.
NCBI ID   WP_023534161.1    Uniprot ID   A0A0S4IC04
Organism   Pseudomonas sp. SWI7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 104159..115226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH041_RS00490 (FH041_00490) fdxA 105338..105661 (-) 324 WP_023534129.1 ferredoxin FdxA -
  FH041_RS00495 (FH041_00495) mutS 105801..108374 (-) 2574 WP_023534160.1 DNA mismatch repair protein MutS -
  FH041_RS00500 (FH041_00500) - 108574..109056 (+) 483 WP_027913896.1 CinA family protein -
  FH041_RS00505 (FH041_00505) recA 109159..110226 (+) 1068 WP_023534161.1 recombinase RecA Machinery gene
  FH041_RS00510 (FH041_00510) recX 110247..110714 (+) 468 WP_027913897.1 recombination regulator RecX -
  FH041_RS00515 (FH041_00515) - 110730..111839 (-) 1110 WP_059183694.1 TIGR00730 family Rossman fold protein -
  FH041_RS00520 (FH041_00520) - 111958..112377 (-) 420 WP_027913898.1 quorum-sensing-regulated virulence factor family protein -
  FH041_RS00525 (FH041_00525) - 112588..113298 (+) 711 WP_059183695.1 tRNA-uridine aminocarboxypropyltransferase -
  FH041_RS00530 (FH041_00530) erdR 113474..114124 (+) 651 WP_027913900.1 response regulator transcription factor ErdR -
  FH041_RS00535 (FH041_00535) - 114198..114566 (+) 369 WP_027913901.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37522.87 Da        Isoelectric Point: 6.1615

>NTDB_id=368366 FH041_RS00505 WP_023534161.1 109159..110226(+) (recA) [Pseudomonas sp. SWI7]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKSGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYSYQGNKIGQGKANAAKYLHENPAIGSEIEK
QIRDKLLNAGAVAAAAKAAAAQADAGDVAEAEAGY

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=368366 FH041_RS00505 WP_023534161.1 109159..110226(+) (recA) [Pseudomonas sp. SWI7]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAAATCGAACGTCAATTCGGTAAGGGCGCGGTCATGCG
CATGGGCGACCATGAGCGCCAAGCCATCCCTTCCATTTCCACCGGCTCTCTGGGGCTGGACATCGCCCTGGGTATCGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCGGAATCGTCAGGTAAAACCACGCTCACGCTCTCGGTCATCGCC
GAAGCCCAGAAAAGTGGCGCCACCTGTGCGTTCGTCGATGCCGAGCATGCTCTTGATCCGGAGTACGCTGGCAAACTGGG
CGTCAACGTAGACGACCTGCTGGTTTCGCAGCCTGACACGGGTGAGCAGGCGCTGGAAATTACCGACATGTTGGTACGGT
CCAACGCGGTCGACGTCATCATCGTCGACTCCGTGGCGGCGCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCTTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTTATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGTAGTCCGGAAACCACCACCGGCGGCAACGCAC
TGAAGTTCTATGCCTCGGTTCGCCTGGACATCCGCCGCACCGGTGCAGTCAAGGAAGGCGACGAGGTGGTGGGTAGTGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTGGCGCCACCATTCCGTCAAGCGGAATTCCAGATTCTGTACGGCAAGGGTAT
CTACCGTAACGGTGAAATCATCGACCTGGGCGTGTCTCAGGGCCTGGTCGAGAAATCGGGCGCCTGGTACAGCTATCAAG
GCAACAAGATCGGTCAGGGCAAGGCGAATGCTGCCAAGTACCTGCATGAGAATCCCGCTATCGGTAGCGAAATCGAGAAG
CAGATCCGCGACAAGCTGCTCAATGCCGGTGCTGTAGCCGCTGCTGCCAAGGCTGCAGCCGCACAGGCCGATGCGGGTGA
CGTGGCCGAAGCCGAAGCTGGCTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S4IC04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

91.014

97.183

0.885
  recA Acinetobacter baylyi ADP1

75.595

94.648

0.715
  recA Acinetobacter baumannii D1279779

75.15

94.085

0.707
  recA Vibrio cholerae strain A1552

72.093

96.901

0.699
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.093

96.901

0.699
  recA Glaesserella parasuis strain SC1401

70.487

98.31

0.693
  recA Ralstonia pseudosolanacearum GMI1000

71.343

94.366

0.673
  recA Neisseria gonorrhoeae MS11

71.605

91.268

0.654
  recA Neisseria gonorrhoeae MS11

71.605

91.268

0.654
  recA Neisseria gonorrhoeae strain FA1090

71.605

91.268

0.654
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.988

94.648

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.976

94.085

0.583
  recA Helicobacter pylori 26695

62.997

92.113

0.58
  recA Helicobacter pylori strain NCTC11637

62.997

92.113

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

61.934

93.239

0.577
  recA Streptococcus mitis NCTC 12261

56.772

97.746

0.555
  recA Streptococcus pyogenes NZ131

55.556

98.873

0.549
  recA Streptococcus mitis SK321

56.196

97.746

0.549
  recA Streptococcus pneumoniae R6

59.202

91.831

0.544
  recA Streptococcus pneumoniae TIGR4

59.202

91.831

0.544
  recA Streptococcus pneumoniae Rx1

59.202

91.831

0.544
  recA Streptococcus pneumoniae D39

59.202

91.831

0.544
  recA Streptococcus mutans UA159

59.077

91.549

0.541
  recA Latilactobacillus sakei subsp. sakei 23K

59.502

90.423

0.538
  recA Lactococcus lactis subsp. cremoris KW2

57.276

90.986

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

91.831

0.518

Multiple sequence alignment