Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NHAL_RS05525 Genome accession   NC_013960
Coordinates   1115166..1116194 (+) Length   342 a.a.
NCBI ID   WP_013032181.1    Uniprot ID   D5BZJ4
Organism   Nitrosococcus halophilus Nc 4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1110166..1121194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHAL_RS05510 (Nhal_1115) mutS 1111207..1113789 (-) 2583 WP_013032178.1 DNA mismatch repair protein MutS -
  NHAL_RS05515 (Nhal_1116) pncC 1114054..1114542 (+) 489 WP_013032179.1 nicotinamide-nucleotide amidase -
  NHAL_RS05520 (Nhal_1117) thpR 1114520..1115059 (+) 540 WP_013032180.1 RNA 2',3'-cyclic phosphodiesterase -
  NHAL_RS05525 (Nhal_1118) recA 1115166..1116194 (+) 1029 WP_013032181.1 recombinase RecA Machinery gene
  NHAL_RS05530 (Nhal_1119) - 1116203..1116655 (+) 453 WP_013032182.1 regulatory protein RecX -
  NHAL_RS05535 (Nhal_1120) alaS 1116680..1119301 (+) 2622 WP_013032183.1 alanine--tRNA ligase -
  NHAL_RS05540 (Nhal_1121) - 1119380..1120621 (+) 1242 WP_013032184.1 aspartate kinase -
  NHAL_RS05545 (Nhal_1122) csrA 1120882..1121052 (+) 171 Protein_1099 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36533.79 Da        Isoelectric Point: 5.5579

>NTDB_id=36760 NHAL_RS05525 WP_013032181.1 1115166..1116194(+) (recA) [Nitrosococcus halophilus Nc 4]
MDENRKKALGAALSQIEKQFGKGAVMRLGDANTVRGVEVISTGSLGLDIALGVGGLPRGRVVEIFGPEASGKTTLALQVV
AEAQKVGGTAAFVDAEHALDPQYAEKLGVNVDDLLVSQPDTGEQALEIADMLVRSGAVDVVVIDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANIKRSNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSLKKGEEIVGN
ETRVKIVKNKVAPPFKQISFDILYGSGVSREGEIIDLGVQEGLVQKTGAWYSYNGDRIGQGRDNVRQFLKEHQELAQGIE
ASIREKLLPSKAALAEAEEVEA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=36760 NHAL_RS05525 WP_013032181.1 1115166..1116194(+) (recA) [Nitrosococcus halophilus Nc 4]
ATGGACGAAAACCGGAAAAAAGCGCTGGGAGCTGCCCTTTCACAGATTGAGAAGCAATTTGGCAAAGGCGCGGTAATGCG
TCTCGGTGATGCTAACACCGTACGCGGGGTCGAGGTGATCTCTACCGGCTCTCTAGGGCTTGATATTGCCCTCGGGGTGG
GAGGGTTGCCACGAGGCCGTGTGGTTGAAATCTTTGGGCCAGAGGCCTCAGGCAAGACGACTTTAGCGCTACAAGTCGTC
GCAGAAGCTCAGAAGGTGGGAGGGACGGCGGCTTTTGTGGACGCTGAACACGCCCTGGATCCTCAGTATGCTGAGAAATT
GGGGGTTAATGTTGATGACCTTCTTGTTTCCCAACCGGATACGGGGGAGCAAGCGCTAGAGATTGCCGATATGTTGGTCC
GTTCAGGGGCAGTGGATGTGGTTGTGATAGACTCGGTAGCCGCTTTGACTCCCAAAGCGGAGATTGAGGGGGAAATGGGC
GACTCCCATGTAGGCTTGCAAGCCAGGTTGATGTCTCAGGCCCTGCGCAAACTTACCGCGAATATCAAGCGCTCCAATAC
ACTGGTTGTCTTTATTAACCAGATTCGAATGAAAATTGGGGTGATGTTTGGTAGCCCGGAGACGACCACCGGTGGTAATG
CGCTCAAATTTTATGCTTCTGTGCGTTTGGATATTCGTCGAGTGGGTTCCCTCAAAAAAGGGGAGGAGATCGTTGGTAAC
GAAACCCGGGTGAAGATTGTTAAGAACAAGGTGGCGCCGCCTTTCAAACAGATCTCCTTCGACATCCTTTATGGGAGCGG
AGTTTCTCGGGAAGGAGAGATTATCGATCTGGGTGTTCAGGAAGGGCTTGTCCAAAAGACAGGCGCTTGGTACAGCTATA
ATGGGGATCGGATTGGTCAAGGCAGGGATAATGTGCGTCAATTTCTCAAGGAACACCAAGAACTCGCCCAGGGCATTGAA
GCCAGTATCCGGGAGAAGCTCTTGCCGAGCAAAGCGGCATTGGCAGAGGCCGAGGAGGTAGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5BZJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

77.064

95.614

0.737
  recA Pseudomonas stutzeri DSM 10701

75

97.076

0.728
  recA Acinetobacter baylyi ADP1

72.012

100

0.722
  recA Acinetobacter baumannii D1279779

73.333

96.491

0.708
  recA Neisseria gonorrhoeae MS11

73.457

94.737

0.696
  recA Neisseria gonorrhoeae MS11

73.457

94.737

0.696
  recA Neisseria gonorrhoeae strain FA1090

73.457

94.737

0.696
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.256

95.906

0.693
  recA Vibrio cholerae strain A1552

72.256

95.906

0.693
  recA Glaesserella parasuis strain SC1401

67.164

97.953

0.658
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.955

96.784

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.72

95.906

0.611
  recA Bacillus subtilis subsp. subtilis str. 168

64.907

94.152

0.611
  recA Helicobacter pylori 26695

62.5

95.906

0.599
  recA Helicobacter pylori strain NCTC11637

62.195

95.906

0.596
  recA Streptococcus pneumoniae R6

58.824

99.415

0.585
  recA Streptococcus pneumoniae TIGR4

58.824

99.415

0.585
  recA Streptococcus pneumoniae Rx1

58.824

99.415

0.585
  recA Streptococcus pneumoniae D39

58.824

99.415

0.585
  recA Streptococcus mutans UA159

61.35

95.322

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

61.18

94.152

0.576
  recA Streptococcus pyogenes NZ131

59.574

96.199

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.877

94.737

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.006

92.982

0.567
  recA Streptococcus mitis SK321

58.951

94.737

0.558
  recA Streptococcus mitis NCTC 12261

58.951

94.737

0.558

Multiple sequence alignment