Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SLIT_RS10520 Genome accession   NC_013959
Coordinates   2132901..2133926 (-) Length   341 a.a.
NCBI ID   WP_013030231.1    Uniprot ID   -
Organism   Sideroxydans lithotrophicus ES-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2127901..2138926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLIT_RS10505 (Slit_2102) - 2129116..2129628 (-) 513 WP_049870991.1 response regulator -
  SLIT_RS10510 (Slit_2103) alaS 2129738..2132359 (-) 2622 WP_013030229.1 alanine--tRNA ligase -
  SLIT_RS10515 (Slit_2104) recX 2132450..2132923 (-) 474 WP_013030230.1 recombination regulator RecX -
  SLIT_RS10520 (Slit_2105) recA 2132901..2133926 (-) 1026 WP_013030231.1 recombinase RecA Machinery gene
  SLIT_RS10525 (Slit_2106) - 2134011..2134502 (-) 492 WP_013030232.1 CinA family protein -
  SLIT_RS10530 (Slit_2107) - 2134499..2135665 (-) 1167 WP_013030233.1 O-succinylhomoserine sulfhydrylase -
  SLIT_RS10535 (Slit_2108) purF 2135839..2137365 (-) 1527 WP_013030234.1 amidophosphoribosyltransferase -
  SLIT_RS10540 (Slit_2109) - 2137400..2137879 (-) 480 WP_013030235.1 CvpA family protein -
  SLIT_RS10545 (Slit_2110) - 2137889..2138548 (-) 660 WP_013030236.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36424.87 Da        Isoelectric Point: 5.5612

>NTDB_id=36743 SLIT_RS10520 WP_013030231.1 2132901..2133926(-) (recA) [Sideroxydans lithotrophicus ES-1]
MDDNKSKALAAALSQIEKQFGKGSIMRLGESEVGKDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVI
AEMQKMGGTAAFIDAEHALDPGYAKKLGVKVEDLLISQPDNGEQALEIVDMLVRSGSVDVVVVDSVAALTPKAEIEGEMG
DAQMGLHARLMSQALRKLTANINRSNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRTGAIKKGDEVIGN
ETRVKVVKNKVAPPFKEANFDILYGEGISREGEIIELGVLHKIVEKSGAWYAYNGEKIGQGKDNAREFLKSNPVIAAEIE
NRVRAAVGVAALGVSEVAEEA

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=36743 SLIT_RS10520 WP_013030231.1 2132901..2133926(-) (recA) [Sideroxydans lithotrophicus ES-1]
ATGGATGACAACAAGAGCAAGGCACTCGCGGCGGCACTCAGCCAGATCGAAAAGCAGTTTGGCAAAGGCTCTATCATGCG
GCTGGGCGAGAGCGAGGTCGGCAAGGACATCCAGGTCGTGTCGACCGGTTCGCTGGGTCTGGACATCGCGCTGGGCGTCG
GCGGCCTGCCGCGCGGTCGCGTGATCGAGATCTACGGCCCGGAATCCTCCGGCAAGACCACGCTCACCCTGCAAGTCATC
GCCGAGATGCAGAAGATGGGCGGTACCGCTGCTTTCATCGATGCCGAGCACGCGCTCGATCCGGGCTATGCCAAGAAGCT
GGGCGTGAAGGTCGAAGACCTGCTGATCTCGCAGCCGGACAACGGCGAGCAGGCGCTGGAGATCGTCGACATGCTGGTGC
GCTCCGGTTCGGTCGATGTGGTGGTGGTCGACTCCGTTGCCGCGCTGACGCCGAAGGCCGAGATCGAAGGTGAGATGGGT
GATGCGCAGATGGGCCTGCATGCCCGCCTGATGTCGCAAGCGCTACGCAAGCTCACCGCGAATATCAATCGTTCCAATAC
CATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAATCCCGAGACCACCACCGGTGGCAATG
CGCTGAAGTTCTACGCTTCGGTGCGCATGGATATCCGCCGCACTGGTGCGATCAAGAAGGGCGACGAGGTCATCGGCAAC
GAGACCCGCGTCAAGGTGGTCAAGAACAAGGTTGCACCTCCGTTCAAGGAAGCCAACTTCGACATCCTGTATGGCGAAGG
CATCTCGCGCGAGGGCGAGATCATCGAGCTGGGTGTGCTGCACAAGATCGTCGAGAAGTCCGGCGCATGGTATGCCTACA
ACGGCGAGAAGATCGGCCAGGGCAAGGATAATGCGCGCGAATTCCTGAAGAGCAACCCGGTGATCGCCGCCGAGATCGAG
AACAGGGTGCGTGCGGCGGTCGGCGTCGCCGCCTTGGGCGTCAGTGAAGTCGCAGAAGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.077

95.308

0.754
  recA Pseudomonas stutzeri DSM 10701

73.716

97.067

0.716
  recA Vibrio cholerae strain A1552

74.383

95.015

0.707
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.383

95.015

0.707
  recA Neisseria gonorrhoeae MS11

72.644

96.481

0.701
  recA Neisseria gonorrhoeae MS11

72.644

96.481

0.701
  recA Neisseria gonorrhoeae strain FA1090

72.644

96.481

0.701
  recA Acinetobacter baylyi ADP1

72.84

95.015

0.692
  recA Acinetobacter baumannii D1279779

72.84

95.015

0.692
  recA Glaesserella parasuis strain SC1401

72.05

94.428

0.68
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.463

96.188

0.639
  recA Bacillus subtilis subsp. subtilis str. 168

65.257

97.067

0.633
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.865

97.654

0.633
  recA Helicobacter pylori strain NCTC11637

63.83

96.481

0.616
  recA Helicobacter pylori 26695

63.526

96.481

0.613
  recA Latilactobacillus sakei subsp. sakei 23K

61.834

99.12

0.613
  recA Lactococcus lactis subsp. cremoris KW2

60.651

99.12

0.601
  recA Streptococcus mitis NCTC 12261

62.006

96.481

0.598
  recA Streptococcus pneumoniae Rx1

62.006

96.481

0.598
  recA Streptococcus mitis SK321

62.006

96.481

0.598
  recA Streptococcus pneumoniae D39

62.006

96.481

0.598
  recA Streptococcus pneumoniae R6

62.006

96.481

0.598
  recA Streptococcus pneumoniae TIGR4

62.006

96.481

0.598
  recA Streptococcus mutans UA159

61.631

97.067

0.598
  recA Streptococcus pyogenes NZ131

61.515

96.774

0.595
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.42

95.015

0.584

Multiple sequence alignment